Merge pull request #151 from NOAA-EDAB/page-updates

Tech Doc page updates from SOE submissions

Author: andybeet

DESCRIPTION

@@ -2,7 +2,7 @@ Package: placeholder
 Type: Book
 Title: Technical Documentation, State of the Ecosystem Report
 Description: Technical documentation for State of the Ecosystem Reporting.
-Version: 2.0.0
+Version: 2026.0.0
 Depends: 
   bookdown, 
   rmarkdown,
@@ -16,7 +16,7 @@ Depends:
   stocksmart,
   DT
 Remotes:
-  NOAA-EDAB/ecodata,
+  NOAA-EDAB/ecodata@dev,
   NOAA-EDAB/stocksmart
 
 

chapters/grayseal.Rmd

@@ -7,7 +7,7 @@
 
 **Indicator category**: Synthesis of published information; Published methods
 
-**Contributor(s)**: Kristin Precoda, Kimberly Murray, Debra Palka
+**Contributor(s)**: Kristin Precoda, Debra Palka
 
 **Data steward**: Debra Palka <debra.palka@noaa.gov>
 
@@ -20,16 +20,16 @@
 
 
 ### Data sources
-Reported gray seal bycatch estimates and potential biological removal levels can be found in publicly available documents, namely NOAA Fisheries Northeast Fisheries Science Center (NEFSC) Center Reference Documents (CRDs) on the NEFSC [publications page](https://www.fisheries.noaa.gov/new-england-mid-atlantic/science-data/northeast-fisheries-science-center-publications) and [Marine Mammal Protection Stock Assessments](https://www.fisheries.noaa.gov/national/marine-mammal-protection/marine-mammal-stock-assessment-reports-region) respectively. More detailed documentation as to the methods employed can be found in the CRDs. 
+Reported gray seal bycatch estimates and potential biological removal levels can be found in publicly available documents, namely NOAA Fisheries Northeast Fisheries Science Center (NEFSC) Center Reference Documents (CRDs) on the NEFSC [publications page](https://www.fisheries.noaa.gov/new-england-mid-atlantic/science-data/northeast-fisheries-science-center-publications) and [Marine Mammal Protection Stock Assessments](https://www.fisheries.noaa.gov/national/marine-mammal-protection/marine-mammal-stock-assessment-reports-region) respectively. More detailed documentation as to the methods employed can be found in the CRDs.
 
 
 ### Data extraction 
 Annual gillnet bycatch estimates are documented in the CRDs. These feed into the Stock Assessment Reports which report both the annual bycatch estimate and the mean 5-year estimate. 
 
 ### Data analysis
 Annual estimates from all fisheries as reported in the CRDs are summed together and the CV of the sum is calculated using the delta method. The 95% confidence intervals are then calculated from the sums and associated CVs, assuming a lognormal distribution.
-LCI = estimate / exp[qnorm(0.975) * sqrt(log(1+CV2))]
-UCI = estimate * exp[qnorm(0.975) * sqrt(log(1+CV2))]
+LCI = estimate / exp[qnorm(0.975) * sqrt(log(1+CV<sup>2</sup>))]
+UCI = estimate * exp[qnorm(0.975) * sqrt(log(1+CV<sup>2</sup>))]
 
 Data were analyzed and formatted for inclusion in the `ecodata` R package using the R code found here, [Gray Seal](https://raw.githubusercontent.com/NOAA-EDAB/ecodata/master/data-raw/get_grayseal.R).