Update publish_conda.yml

Author: ilaflott

.github/workflows/publish_conda.yml

@@ -13,30 +13,29 @@ permissions:
 jobs:
   condapublish:
     runs-on: ubuntu-latest
+
     defaults:
       run:
         shell: bash -l {0}
+
     steps:
       - name: Checkout Files
         uses: actions/checkout@v4
         with:
           submodules: 'recursive'
 
-      - name: Setup Conda
+      - name: Set up base Miniforge
         uses: conda-incubator/setup-miniconda@v3
         with:
-          auto-activate: true
-          activate-environment: base
-          conda-remove-defaults: true
           miniforge-version: latest
-          channels: conda-forge,noaa-gfdl
+          conda-remove-defaults: true
+          python-version: "3.11"
 
       - name: Configure Conda
         run: |
-          echo "removing main and r channels from defaults"
-          conda config --remove channels defaults || true
-          conda config --remove channels main || true
-          conda config --remove channels r || true
+          echo "removing conda default channels, appending open-source ones"
+          conda config --append channels conda-forge
+          conda config --append channels noaa-gfdl
 
           echo "setting strict channel priority"
           conda config --set channel_priority strict
@@ -50,7 +49,6 @@ jobs:
       - name: Update Conda and Conda Package Indices
         run: |
           echo "updating conda and package channel indices for conda-forge, noaa-gfdl"
-          conda update -y conda
           conda update -y --all --override-channels -c conda-forge
           conda update -y --all --override-channels -c noaa-gfdl
 
@@ -63,4 +61,43 @@ jobs:
         run: |
           echo "conda building fremor package"
           export ANACONDA_API_TOKEN=${{ secrets.ANACONDA_TOKEN }}
-          conda build .
+          conda build --version
+          conda build --debug .
+
+        # -----------------------------------------------------------------
+      # Post-publish verification: install epmt from the noaa-gfdl channel
+      # into a clean environment and run tests against it.
+      # -----------------------------------------------------------------
+      - name: Wait for noaa-gfdl channel to update
+        run: |
+          echo "Waiting 1 minutes for the noaa-gfdl channel index to update..."
+          sleep 60
+
+      - name: Remove checked-out source code
+        run: |
+          echo "Removing workspace source to ensure tests run against the installed package"
+          rm -rf "$GITHUB_WORKSPACE"/*
+          ls -la "$GITHUB_WORKSPACE"
+
+      - name: Create clean environment and install fremor from noaa-gfdl
+        run: |
+          conda create -y -n fremor-verify python=${{ matrix.python-version }}
+          conda activate fremor-verify
+          conda install -y -c noaa-gfdl -c conda-forge fremor
+          conda install -y conda-forge::pytest
+          conda list -n fremor-verify
+
+        - name: Resolve site-packages path
+        id: site_pkgs
+        run: |
+          conda activate fremor-verify
+          site_pkgs=$(python3 -c 'import site; print(site.getsitepackages()[0]);')
+          echo "site_pkgs=${site_pkgs}" >> "$GITHUB_OUTPUT"
+          echo "site-packages path: ${site_pkgs}"
+
+      - name: test(s) on package installed from channel
+        run: |
+          conda activate fremor-verify
+          fremor --help
+          fremor --version
+          pytest -x -vv ${{ steps.site_pkgs.outputs.site_pkgs }}/fremor/tests