BioNeMo Model Convergence Tests #19
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| name: "BioNeMo Model Convergence Tests" | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| branch: | |
| description: "Branch to use (ignored if commit SHA is provided)" | |
| required: true | |
| default: "main" | |
| type: string | |
| commit_sha: | |
| description: "Commit SHA (optional - overrides branch if provided)" | |
| required: false | |
| type: string | |
| model_config: | |
| description: "Model configuration to use" | |
| required: true | |
| default: "esm2_accelerate" | |
| type: choice | |
| options: | |
| - amplify_accelerate_te_fp8.yaml | |
| - esm2_accelerate | |
| - esm2_native_te_mfsdp | |
| - esm2_native_te_nvfsdp_thd | |
| - geneformer_native_te_nvfsdp_fp8 | |
| config_override: | |
| description: "Custom config override (optional, e.g. 'geneformer_106m')" | |
| required: false | |
| type: string | |
| jobs: | |
| submit-lepton-jobs: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| cache: "pip" | |
| cache-dependency-path: | | |
| requirements.ci.txt | |
| ci/lepton/model_convergence/scripts/requirements.txt | |
| - name: Install deps | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install "hydra-core==1.3.2" "omegaconf==2.3.0" "leptonai" typer pandas | |
| python - <<'PY' | |
| import hydra, omegaconf, leptonai | |
| print("OK:", hydra.__version__, omegaconf.__version__, leptonai.__version__) | |
| PY | |
| - name: Submit Lepton Jobs | |
| env: | |
| LEP_LOGIN_CREDENTIALS: ${{ secrets.LEP_LOGIN_CREDENTIALS }} | |
| run: | | |
| lep login -c "$LEP_LOGIN_CREDENTIALS" || true | |
| if [ -n "${{ inputs.config_override }}" ]; then | |
| python ci/lepton/model_convergence/scripts/launch_job.py \ | |
| --config-name="${{ inputs.config_override }}.yaml" \ | |
| branch="${{ inputs.branch }}" \ | |
| commit_sha="${{ inputs.commit_sha }}" | |
| else | |
| python ci/lepton/model_convergence/scripts/launch_job.py \ | |
| --config-name="recipes/${{ inputs.model_config }}" \ | |
| branch="${{ inputs.branch }}" \ | |
| commit_sha="${{ inputs.commit_sha }}" | |
| fi |