bionemo-recipes.yml

name: "BioNeMo Recipes CI"

on:
  push:
    branches:
      - main
      - "pull-request/[0-9]+"
      - "dependabot/**"
  merge_group:
    types: [checks_requested]
  schedule:
    - cron: "0 7 * * *" # Runs at 7 AM UTC daily (12 AM MST)

defaults:
  run:
    shell: bash -x -e -u -o pipefail {0}

concurrency:
  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
  cancel-in-progress: true

jobs:
  changed-files:
    if: github.event_name != 'schedule'
    runs-on: ubuntu-latest
    outputs:
      any_changed: ${{ steps.changed-files.outputs.changed_directories }}
    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0
      - uses: step-security/changed-files@v46
        id: changed-files
        with:
          base_sha: main
          dir_names: true
          dir_names_max_depth: 2
          files: |
            'models/**'
            'recipes/**'
      - name: List all changed files
        env:
          ALL_CHANGED_DIRECTORIES: ${{ steps.changed-files.outputs.all_changed_directories }}
        run: |
          for directory in ${ALL_CHANGED_DIRECTORIES}; do
            echo "$directory was changed"
          done

  pre-commit:
    runs-on: ubuntu-latest
    needs: changed-files
    if: needs.changed-files.outputs.any_changed == 'true'
    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0
      - uses: actions/setup-python@v5
        with:
          python-version: "3.13"
          cache: "pip"
      - name: Setup UV
        uses: astral-sh/setup-uv@v6
        with:
          enable-cache: true
      - run: |
          uv tool install pre-commit --with pre-commit-uv --force-reinstall
          uv tool install tach>=0.9.0
          uv tool update-shell
      - run: ./ci/scripts/static_checks.sh