updating changed-files, adding new CI script for recipes

Signed-off-by: Peter St. John <pstjohn@nvidia.com>

Author: pstjohn

.github/workflows/bionemo-recipes.yml

@@ -0,0 +1,70 @@
+name: "BioNeMo Recipes CI"
+
+on:
+  push:
+    branches:
+      - main
+      - "pull-request/[0-9]+"
+      - "dependabot/**"
+  merge_group:
+    types: [checks_requested]
+  schedule:
+    - cron: "0 7 * * *" # Runs at 7 AM UTC daily (12 AM MST)
+
+defaults:
+  run:
+    shell: bash -x -e -u -o pipefail {0}
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  changed-files:
+    if: github.event_name != 'schedule'
+    runs-on: ubuntu-latest
+    outputs:
+      any_changed: ${{ steps.changed-files.outputs.changed_directories }}
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+      - uses: step-security/changed-files@v46
+        id: changed-files
+        with:
+          base_sha: main
+          dir_names: true
+          dir_names_max_depth: 2
+          files: |
+            'models/**'
+            'recipes/**'
+      - name: List all changed files
+        env:
+          ALL_CHANGED_DIRECTORIES: ${{ steps.changed-files.outputs.all_changed_directories }}
+        run: |
+          for directory in ${ALL_CHANGED_DIRECTORIES}; do
+            echo "$directory was changed"
+          done
+
+  pre-commit:
+    runs-on: ubuntu-latest
+    needs: changed-files
+    if: needs.changed-files.outputs.any_changed == 'true'
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.13"
+          cache: "pip"
+      - name: Setup UV
+        uses: astral-sh/setup-uv@v6
+        with:
+          enable-cache: true
+      - run: |
+          uv tool install pre-commit --with pre-commit-uv --force-reinstall
+          uv tool install tach>=0.9.0
+          uv tool update-shell
+      - run: ./ci/scripts/static_checks.sh
+

.github/workflows/unit-tests.yml

@@ -25,7 +25,6 @@ jobs:
     runs-on: ubuntu-latest
     outputs:
       any_changed: ${{ steps.changed-files.outputs.any_changed }}
-      docs_changed: ${{ steps.changed-files.outputs.docs_any_changed }}
     steps:
       - uses: actions/checkout@v4
         with:
@@ -34,15 +33,10 @@ jobs:
         id: changed-files
         with:
           base_sha: main
-          files_yaml: |
-            framework:
-              - '3rdparty/**'
-              - 'sub-packages/**'
-              - 'docker_build_patches/**'
-              - 'requirements-*.txt'
-              - 'Dockerfile'
-            docs:
-              - 'docs/**.ipynb'
+          files: |
+            '!models/**'
+            '!recipes/**'
+            '!**.md'
       - name: List all changed files
         env:
           ALL_CHANGED_FILES: ${{ steps.changed-files.outputs.all_changed_files }}
@@ -53,6 +47,8 @@ jobs:
 
   pre-commit:
     runs-on: ubuntu-latest
+    needs: changed-files
+    if: needs.changed-files.outputs.any_changed == 'true'
     steps:
       - uses: actions/checkout@v4
         with:
@@ -227,8 +223,7 @@ jobs:
     runs-on: linux-amd64-gpu-l4-latest-1
     if: |
       github.event_name == 'schedule' || github.event_name == 'merge_group' ||
-      contains(fromJSON(needs.get-pr-labels.outputs.labels || '[]'), 'INCLUDE_NOTEBOOKS_TESTS') ||
-      needs.changed-files.outputs.docs_changed == 'true'
+      contains(fromJSON(needs.get-pr-labels.outputs.labels || '[]'), 'INCLUDE_NOTEBOOKS_TESTS')
     container:
       image: svcbionemo023/bionemo-framework:${{ github.run_id }}
       credentials: