Merge pull request #45 from NREL/bnb/fno

Bnb/fno

Author: bnb32

phygnn/layers/custom_layers.py

@@ -597,6 +597,126 @@ def call(self, x):
         return x
 
 
+class FNO(tf.keras.layers.Layer):
+    """Custom layer for fourier neural operator block
+
+    Note that this is only set up to take a channels-last input
+
+    References
+    ----------
+    1. FourCastNet: A Global Data-driven High-resolution Weather Model using
+    Adaptive Fourier Neural Operators. http://arxiv.org/abs/2202.11214
+    2. Adaptive Fourier Neural Operators: Efficient Token Mixers for
+    Transformers. http://arxiv.org/abs/2111.13587
+    """
+
+    def __init__(self, filters, sparsity_threshold=0.5, activation='relu'):
+        """
+        Parameters
+        ----------
+        filters : int
+            Number of dense connections in the FNO block.
+        sparsity_threshold : float
+            Parameter to control sparsity and shrinkage in the softshrink
+            activation function following the MLP layers.
+        activation : str
+            Activation function used in MLP layers.
+        """
+
+        super().__init__()
+        self._filters = filters
+        self._fft_layer = None
+        self._ifft_layer = None
+        self._mlp_layers = None
+        self._activation = activation
+        self._n_channels = None
+        self._perms_in = None
+        self._perms_out = None
+        self._lambd = sparsity_threshold
+
+    def _softshrink(self, x):
+        """Softshrink activation function
+
+        https://pytorch.org/docs/stable/generated/torch.nn.Softshrink.html
+        """
+        values_below_lower = tf.where(x < -self._lambd, x + self._lambd, 0)
+        values_above_upper = tf.where(self._lambd < x, x - self._lambd, 0)
+        return values_below_lower + values_above_upper
+
+    def _fft(self, x):
+        """Apply needed transpositions and fft operation."""
+        x = tf.transpose(x, perm=self._perms_in)
+        x = self._fft_layer(tf.cast(x, tf.complex64))
+        x = tf.transpose(x, perm=self._perms_out)
+        return x
+
+    def _ifft(self, x):
+        """Apply needed transpositions and ifft operation."""
+        x = tf.transpose(x, perm=self._perms_in)
+        x = self._ifft_layer(tf.cast(x, tf.complex64))
+        x = tf.transpose(x, perm=self._perms_out)
+        return x
+
+    def build(self, input_shape):
+        """Build the FNO layer based on an input shape
+
+        Parameters
+        ----------
+        input_shape : tuple
+            Shape tuple of the input tensor
+        """
+        self._n_channels = input_shape[-1]
+        dims = list(range(len(input_shape)))
+        self._perms_in = [dims[-1], *dims[:-1]]
+        self._perms_out = [*dims[1:], dims[0]]
+
+        if len(input_shape) == 4:
+            self._fft_layer = tf.signal.fft2d
+            self._ifft_layer = tf.signal.ifft2d
+        elif len(input_shape) == 5:
+            self._fft_layer = tf.signal.fft3d
+            self._ifft_layer = tf.signal.ifft3d
+        else:
+            msg = ('FNO layer can only accept 4D or 5D data '
+                   'for image or video input but received input shape: {}'
+                   .format(input_shape))
+            logger.error(msg)
+            raise RuntimeError(msg)
+
+        self._mlp_layers = [
+            tf.keras.layers.Dense(self._filters, activation=self._activation),
+            tf.keras.layers.Dense(self._n_channels)]
+
+    def _mlp_block(self, x):
+        """Run mlp layers on input"""
+        for layer in self._mlp_layers:
+            x = layer(x)
+        return x
+
+    def call(self, x):
+        """Call the custom FourierNeuralOperator layer
+
+        Parameters
+        ----------
+        x : tf.Tensor
+            Input tensor.
+
+        Returns
+        -------
+        x : tf.Tensor
+            Output tensor, this is the FNO weights added to the original input
+            tensor.
+        """
+        t_in = x
+        x = self._fft(x)
+        x = self._mlp_block(x)
+        x = self._softshrink(x)
+        x = self._ifft(x)
+        x = tf.cast(x, dtype=t_in.dtype)
+
+        return x + t_in
+
+
 class Sup3rAdder(tf.keras.layers.Layer):
     """Layer to add high-resolution data to a sup3r model in the middle of a
     super resolution forward pass."""

tests/test_layers.py

@@ -5,13 +5,15 @@
 import pytest
 import tensorflow as tf
 
-from phygnn.layers.custom_layers import (SkipConnection,
-                                         SpatioTemporalExpansion,
-                                         FlattenAxis,
-                                         ExpandDims,
-                                         TileLayer,
-                                         GaussianNoiseAxis)
-from phygnn.layers.handlers import Layers, HiddenLayers
+from phygnn.layers.custom_layers import (
+    ExpandDims,
+    FlattenAxis,
+    GaussianNoiseAxis,
+    SkipConnection,
+    SpatioTemporalExpansion,
+    TileLayer,
+)
+from phygnn.layers.handlers import HiddenLayers, Layers
 
 
 @pytest.mark.parametrize(
@@ -208,7 +210,7 @@ def test_temporal_depth_to_time(t_mult, s_mult, t_roll):
     n_filters = 2 * s_mult**2 * t_mult
     shape = (1, 4, 4, 3, n_filters)
     n = np.product(shape)
-    x = np.arange(n).reshape((shape))
+    x = np.arange(n).reshape(shape)
     y = layer(x)
     assert y.shape[0] == x.shape[0]
     assert y.shape[1] == s_mult * x.shape[1]
@@ -387,3 +389,37 @@ def test_squeeze_excite_3d():
         x = layer(x)
         with pytest.raises(tf.errors.InvalidArgumentError):
             tf.assert_equal(x_in, x)
+
+
+def test_fno_2d():
+    """Test the FNO layer with 2D data (4D tensor input)"""
+    hidden_layers = [
+        {'class': 'FNO', 'filters': 8, 'sparsity_threshold': 0.01,
+         'activation': 'relu'}]
+    layers = HiddenLayers(hidden_layers)
+    assert len(layers.layers) == 1
+
+    x = np.random.normal(0, 1, size=(1, 4, 4, 3))
+
+    for layer in layers:
+        x_in = x
+        x = layer(x)
+        with pytest.raises(tf.errors.InvalidArgumentError):
+            tf.assert_equal(x_in, x)
+
+
+def test_fno_3d():
+    """Test the FNO layer with 3D data (5D tensor input)"""
+    hidden_layers = [
+        {'class': 'FNO', 'filters': 8, 'sparsity_threshold': 0.01,
+         'activation': 'relu'}]
+    layers = HiddenLayers(hidden_layers)
+    assert len(layers.layers) == 1
+
+    x = np.random.normal(0, 1, size=(1, 4, 4, 6, 3))
+
+    for layer in layers:
+        x_in = x
+        x = layer(x)
+        with pytest.raises(tf.errors.InvalidArgumentError):
+            tf.assert_equal(x_in, x)