The format is based on Keep a Changelog and this project adheres to Semantic Versioning.
- Fix missing population in the samplesheet generator
- Fix regex search in the samplesheet generator
- Added Options to save or discard intermediate fastq files
- Fixed various issues with MultiQC for stacks
- Moved to DSL2 + latest nf-core template
- Added VCFTools: het, relatedness2, depth and imiss
- Added samplesheet with single-end support
- Added test profile and test data
- Added nf-core/cat_fastq
- Samplesheet generator script
- Support for multipopulation popmap
- Clean up parameters used for stacks:process_radtags and stacks:denovo_map
- Added a minimum of documentation
This pipeline is resurrected
- New nf-core DSL 2 template implemented.
- Name has been changed to remove nf-core branding - "radqc"
- Updated to v3 template
The final release. The project is effectively abandoned from this point on. Use with care!
Initial release of nf-core/radseq, created with the NGI-NFcookiecutter template: https://github.com/ewels/NGI-NFcookiecutter.