Release preparation -- feature/release 0.4.2 (#138)

* preparation for release 0.4.2

* changed date

Author: alperyeg

LICENSE.txt

@@ -1,4 +1,4 @@
-Copyright (c) 2014, Elephant authors and contributors
+Copyright (c) 2014-2018, Elephant authors and contributors
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

doc/conf.py

@@ -44,7 +44,7 @@
 # General information about the project.
 project = u'Elephant'
 authors = u'Elephant authors and contributors'
-copyright = u'2014-2017, ' + authors
+copyright = u'2014-2018, ' + authors
 
 # The version info for the project you're documenting, acts as replacement for
 # |version| and |release|, also used in various other places throughout the
@@ -53,7 +53,7 @@
 # The short X.Y version.
 version = '0.4'
 # The full version, including alpha/beta/rc tags.
-release = '0.4.1'
+release = '0.4.2'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

doc/developers_guide.rst

@@ -184,6 +184,8 @@ Making a release
 First check that the version string (in :file:`elephant/__init__.py`, :file:`setup.py`,
 :file:`doc/conf.py` and :file:`doc/install.rst`) is correct.
 
+Second check that the copyright statement (in :file:`LICENCE.txt`, :file:`doc/conf.py`) is correct.
+
 To build a source package::
 
     $ python setup.py sdist

doc/install.rst

@@ -73,8 +73,8 @@ To download and install manually, download the latest package from http://pypi.p
 
 Then::
 
-    $ tar xzf elephant-0.4.1.tar.gz
-    $ cd elephant-0.4.1
+    $ tar xzf elephant-0.4.2.tar.gz
+    $ cd elephant-0.4.2
     $ python setup.py install
     
 or::

doc/release_notes.rst

@@ -2,6 +2,31 @@
 Release Notes
 *************
 
+Elephant 0.4.2 release notes
+===========================
+March 1st 2018
+
+New functions
+=============
+* `spike_train_generation` module:
+  * **inhomogeneous_poisson()** function
+* Modules for Spatio Temporal Pattern Detection (SPADE) `spade_src`:
+  * Module SPADE: `spade.py`
+* Module `statistics.py`:
+  * Added CV2 (coefficient of variation for non-stationary time series)
+* Module `spike_train_correlation.py`:
+  * Added normalization in **cross-correlation histogram()** (CCH)
+
+Other changes
+=============
+* Adapted the `setup.py` to automatically install the spade modules including the compiled `C` files `fim.so`
+* Included testing enviroment for MPI in `travis.yml`
+* Changed function argumens  in `current_source_density.py` to `neo.AnalogSignal` instead list of `neo.AnalogSignal` objects
+* Fixes to travis and setup configuration files
+* Fixed bug in ISI function `isi()`, `statistics.py` module
+* Fixed bug in `dither_spikes()`, `spike_train_surrogates.py`
+* Minor bug fixes
+ 
 Elephant 0.4.1 release notes
 ============================
 March 23rd 2017

elephant/__init__.py

@@ -28,4 +28,4 @@
 except ImportError:
     pass
 
-__version__ = "0.4.1"
+__version__ = "0.4.2"

requirements.txt

@@ -1,9 +1,9 @@
 # essential
--e git+https://github.com/NeuralEnsemble/python-neo.git@snapshot-20150821#egg=neo-snapshot-20150821
+neo>=0.5.0
 numpy>=1.8.2
 quantities>=0.10.1
 scipy>=0.14.0
-six
+six>=1.10.0
 # optional
 #pandas>=0.14.1
 # for building documentation

setup.py

@@ -9,7 +9,7 @@
     from urllib import urlretrieve
 
 long_description = open("README.rst").read()
-install_requires = ['neo>0.3.3',
+install_requires = ['neo>=0.5.0',
                     'numpy>=1.8.2',
                     'quantities>=0.10.1',
                     'scipy>=0.14.0',
@@ -40,7 +40,7 @@
 
 setup(
     name="elephant",
-    version='0.4.1',
+    version='0.4.2',
     packages=['elephant', 'elephant.test'],
     package_data={'elephant': [
         os.path.join('current_source_density_src', 'test_data.mat'),