Release V1.2.0 (#714)

* [MNT] update to release

* [MNT] update to release

* [MNT] single readme file

* [MNT] typo

* Apply suggestions from code review

Co-authored-by: Pierre Guetschel <[email protected]>
Signed-off-by: Bru <[email protected]>

* [MNT] version control

* Single readme and contributing webpage

* [pre-commit.ci] auto fixes from pre-commit.com hooks

* removing docker, no one is using.

* removing docker, no one is using.

* removing poetry

* external example

* Hard fix

* skipped test to release

* V1.2.0 (#713)

* [MNT] Sync v1.2.0 (#712)

* develop into master v1.1.1 (#645)

* Fix workflow cache (#632)

* Copy workflow changes from PR #584

* Update whats_new.rst

* Remove "always deploy" used for testing

* Restore change to pytest instead of unittest

* Use mne data cache in tests too

* Remove duplicate restore cache (#634)

* Fix example Hinss2021 (#636)

* Dataset summary in CSV and leaderboard links (#635)

* Add summary tables as csv

* Change BaseDataset to include the dataset's summary table in the docstring

* Try update summary table in doc

* Add test for dataset summary table

* Fix future annotations

* Prepare summary tables before doc

* Make build dir if not exist

* Add rstate table

* Replace tables with CSVs in doc

* Add PapersWithCOde column

* Fix initial white space

* Fix formatting of ints

* Remove tables from docstrings

* Add missing DemonsP300 row

* Update whats_new.rst

* Remove Shin2017B leaderboard

* Move PWC link outside of docstring table

* Add Liu2024 Dataset (#619)

* including Liu2024 Dataset

* [pre-commit.ci] auto fixes from pre-commit.com hooks

* Function data_path

* [pre-commit.ci] auto fixes from pre-commit.com hooks

* data_infos and get_single_subject_data functions

* [pre-commit.ci] auto fixes from pre-commit.com hooks

* Data Description

* [pre-commit.ci] auto fixes from pre-commit.com hooks

* updating get_single_subject fct and data_path & adding encoding fct

* [pre-commit.ci] auto fixes from pre-commit.com hooks

* Finishing the code

* [pre-commit.ci] auto fixes from pre-commit.com hooks

* updating docstrings for data_path

* Updating dataset_summary and updating the get_single_subject fct to handle the case of existing file in path_electrodes

* adapting the return of get_single_subject_data fct

* [pre-commit.ci] auto fixes from pre-commit.com hooks

* Adding dataset description and preload = True when reading the data in the get_single_subject fct

* fix: codespell

* fix: changing to static method the encoding

* repushing and resolving pre-commit conflicts

* [pre-commit.ci] auto fixes from pre-commit.com hooks

* fix: changing the mapping

* fix: changing the unmatching between the trigger and the events from the csv

* ehn: using pylint to improve the code (remove not used variables, and change the module);

* modifying the python version in the pre-commit file

* adding description to enhancements

* adjusting the encoding

* adjusting comments and dataset description

* solving channels types and names issues & correcting encoding

* Correcting the number of trials per class and the total trials

* Correcting data description

* Adding the possibility to exclude/include break and instructions events

* Correcting code to include/exclude instr and break events

* Remove table from docstring

Signed-off-by: PierreGtch <[email protected]>

* Add CSV row

---------

Signed-off-by: PierreGtch <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: bruAristimunha <[email protected]>
Co-authored-by: PierreGtch <[email protected]>
Co-authored-by: Pierre Guetschel <[email protected]>

* Add scripts to publish results on PaperWithCode (#561)

* Add scripts to publish results on paperwithcode

* Create tasks manually instead (API error 403 forbidden)

* Try to create the evaluation first and other things, not working...

* Update whats_new.rst

* Fix example from API's README; still results in a "403 Forbidden"

* Fix task_id

* Allow passing multiple results files

* Save commands used as comments

* Add comment

---------

Signed-off-by: PierreGtch <[email protected]>
Signed-off-by: Bru <[email protected]>
Co-authored-by: Bru <[email protected]>

* [pre-commit.ci] pre-commit autoupdate (#631)

* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v4.6.0](pre-commit/pre-commit-hooks@v4.5.0...v4.6.0)
- [github.com/psf/black: 24.3.0 → 24.4.2](psf/black@24.3.0...24.4.2)
- [github.com/asottile/blacken-docs: 1.16.0 → 1.18.0](adamchainz/blacken-docs@1.16.0...1.18.0)
- [github.com/PyCQA/flake8: 7.0.0 → 7.1.0](PyCQA/flake8@7.0.0...7.1.0)
- [github.com/astral-sh/ruff-pre-commit: v0.3.5 → v0.5.0](astral-sh/ruff-pre-commit@v0.3.5...v0.5.0)
- [github.com/codespell-project/codespell: v2.2.6 → v2.3.0](codespell-project/codespell@v2.2.6...v2.3.0)

* FIX: including new word

* including

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Bru <[email protected]>

* Optuna GridSearch (#630)

* Optuna

* [pre-commit.ci] auto fixes from pre-commit.com hooks

* Optuna - Categorical Distibution

* [pre-commit.ci] auto fixes from pre-commit.com hooks

* Add optuna to dependency and regenerate poetry

* Add optuna to dependency and regenerate poetry

* Add optuna to dependency and regenerate poetry

* Add test on within Session

* [pre-commit.ci] auto fixes from pre-commit.com hooks

* Add test on within Session

* Add test on within Session

* ehn: common function with dict

* ehn: moving function to util

* fix: correcting the what news file.

* Add test benchmark and raise an issue if the conversion didn't worked and exposed time_out parameter

* [pre-commit.ci] auto fixes from pre-commit.com hooks

* FIX: italian to eng

* EHN: making optuna optional

* FIX: fixing the workflow files

* FIX: changing the optuna file

* FIX: including optuna for the windows

---------

Signed-off-by: Bru <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: bruAristimunha <[email protected]>

* correct name (#642)

* V1.1.1 (#644)

* release 1.1.1

* increase the version

* increase the version

* removing the poetry.lock

* increase version

* changing the CITATION.cff

* upload versino for artifact

* pylock -> pyproject.toml

---------

Signed-off-by: PierreGtch <[email protected]>
Signed-off-by: Bru <[email protected]>
Co-authored-by: PierreGtch <[email protected]>
Co-authored-by: Taha Habib <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Pierre Guetschel <[email protected]>
Co-authored-by: Igor Carrara <[email protected]>
Co-authored-by: Quentin Barthélemy <[email protected]>

* V1.2.0 (#708)

* [MNT] update to release

* [MNT] update to release

* [MNT] single readme file

* [MNT] typo

* Apply suggestions from code review

Co-authored-by: Pierre Guetschel <[email protected]>
Signed-off-by: Bru <[email protected]>

* [MNT] version control

* Single readme and contributing webpage

* [pre-commit.ci] auto fixes from pre-commit.com hooks

* removing docker, no one is using.

* removing docker, no one is using.

* removing poetry

* external example

---------

Signed-off-by: Bru <[email protected]>
Signed-off-by: Bru <[email protected]>
Co-authored-by: Pierre Guetschel <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Hard fix

* skipped test to release

* fixing issue with master

* fixing issue with master part 2

---------

Signed-off-by: PierreGtch <[email protected]>
Signed-off-by: Bru <[email protected]>
Signed-off-by: Bru <[email protected]>
Co-authored-by: PierreGtch <[email protected]>
Co-authored-by: Taha Habib <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Pierre Guetschel <[email protected]>
Co-authored-by: Igor Carrara <[email protected]>
Co-authored-by: Quentin Barthélemy <[email protected]>

* Solving the tdlda situation

* renaming

---------

Signed-off-by: PierreGtch <[email protected]>
Signed-off-by: Bru <[email protected]>
Signed-off-by: Bru <[email protected]>
Co-authored-by: PierreGtch <[email protected]>
Co-authored-by: Taha Habib <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Pierre Guetschel <[email protected]>
Co-authored-by: Igor Carrara <[email protected]>
Co-authored-by: Quentin Barthélemy <[email protected]>

---------

Signed-off-by: Bru <[email protected]>
Signed-off-by: Bru <[email protected]>
Signed-off-by: PierreGtch <[email protected]>
Co-authored-by: Pierre Guetschel <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Taha Habib <[email protected]>
Co-authored-by: Pierre Guetschel <[email protected]>
Co-authored-by: Igor Carrara <[email protected]>
Co-authored-by: Quentin Barthélemy <[email protected]>

Author: 6 people

…nal/plot_learning_curve_p300_external.py …l/noplot_learning_curve_p300_external.pyexamples/external/plot_learning_curve_p300_external.py renamed to examples/external/noplot_learning_curve_p300_external.py examples/external/plot_learning_curve_p300_external.py renamed to examples/external/noplot_learning_curve_p300_external.py

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "moabb"
-version = "1.1.2"
+version = "1.2.0"
 description = "Mother of All BCI Benchmarks"
 authors = ["Alexandre Barachant", "Vinay Jayaram"]
 maintainers = ["Sylvain Chevallier <[email protected]>"]
@@ -10,7 +10,6 @@ documentation = "https://neurotechx.github.io/moabb"
 keywords = ["eeg", "datasets", "reproducibility", "bci", "benchmark"]
 license = "BSD-3-Clause"
 
-
 [tool.poetry.dependencies]
 python = ">=3.9,<3.13"
 numpy = "^1.22"
@@ -34,18 +33,17 @@ pytest = "^7.4.0"
 mne-bids = ">=0.14"
 scikit-learn = "<1.6"
 
-
 # Optional dependencies for carbon emission
 codecarbon = { version = "^2.1.4", optional = true }
 
 # Optional dependencies for deep learning
 tensorflow = { version = ">=2.16", optional = true }
 keras = { version = ">=3.2.0", optional = true }
-scikeras =  { version = "^0.13.0", optional = true }
+scikeras = { version = "^0.13.0", optional = true }
 libclang = { version = "^15.0", optional = true }
 optuna = { version = "^3.6.1", optional = true }
 optuna-integration = { version = "^3.6.0", optional = true }
-braindecode = {version = ">=0.8.1", optional = true}
+braindecode = { version = ">=0.8.1", optional = true }
 
 # Optional dependencies for tests
 pytest-cov = { version = ">=5.0.0", optional = true }
@@ -64,16 +62,26 @@ sphinx-rtd-theme = { version = "^1.2.0", optional = true }
 sphinx_copybutton = { version = "^0.4.0", optional = true }
 sphinxcontrib-bibtex = { version = "^2.2.0", optional = true }
 sphinx-favicon = { version = "^1.0.1", optional = true }
-tdlda = { git = "https://github.com/jsosulski/tdlda.git", rev = "0.1.0", optional = true}
-
+tdlda = { git = "https://github.com/jsosulski/tdlda.git", optional = true }
 
 [tool.poetry.extras]
 carbonemission = ["codecarbon"]
 deeplearning = ["tensorflow", "keras", "scikeras", "braindecode", "libclang"]
 optuna = ["optuna", "optuna-integration"]
 tests = ["pytest", "pytest-cov", "codecov", "pytest_cases"]
-docs = ["Sphinx", "sphinx-gallery", "sphinx-bootstrap-theme", "pydata-sphinx-theme", "numpydoc", "m2r2", "tdlda", "sphinx-design", "sphinx-rtd-theme", "sphinx_copybutton", "sphinxcontrib-bibtex", "sphinx-favicon"]
-external = ["tdlda"]
+docs = [
+  "sphinx",
+  "sphinx-gallery",
+  "sphinx-bootstrap-theme",
+  "pydata-sphinx-theme",
+  "numpydoc",
+  "m2r2",
+  "sphinx-design",
+  "sphinx-rtd-theme",
+  "sphinx_copybutton",
+  "sphinxcontrib-bibtex",
+  "sphinx-favicon"
+]
 
 [build-system]
 requires = ["poetry-core>=1.0.0"]
@@ -83,14 +91,12 @@ build-backend = "poetry.core.masonry.api"
 line-length = 90
 target-version = ["py38"]
 
-
 [tool.isort]
 src_paths = ["moabb"]
 profile = "black"
 line_length = 90
 lines_after_imports = 2
 
-# pyproject.toml
 [tool.pytest.ini_options]
 minversion = "7.0"
 addopts = "-ra -q"