Cannot run ccfwidget #33
Description
I cannot get ccfwidget to run. I get all sorts of errors when I try to do a simple installation from pip with the latest packages and I try to run CCFWidget() in a Jupyter Lab instance. I suspect that a few things have changed in the surrounding jupyter, widget, fsspec, and itk-related packages. @bendichter any ideas? Can you get the widget to run? On dandihub, I also run into the error in #30.
I created a fresh conda environment on my Mac M1, and installed a few older and extra packages which prevented some errors. Using Jupyter Notebook instead of Jupyter Lab to avoid dealing with registering extensions, which appears to have changed in recent jupyter versions and seems to be the cause of an error I experienced.
conda create --name temp python=3.10 --yes
conda activate temp
pip install jupyter ccfwidget yarl aiohttp "itkwidgets==0.32.5"
jupyter notebook
Input:
from ccfwidget import CCFWidget
ccf = CCFWidget()
ccfNo output or error.
In the Chrome Developer Tools console, I see:
utils.js:91 Error: Could not create a model.
at utils.js:91:27
kernel.js:1010 Couldn't process kernel message TypeError: n._deserialize_state is not a function
at u._make_model (manager-base.js:228:42)
manager-base.js:228 Uncaught (in promise) TypeError: n._deserialize_state is not a function
at u._make_model (manager-base.js:228:42)
kernel.js:1010 Couldn't process kernel message TypeError: n._deserialize_state is not a function
at u._make_model (manager-base.js:228:42)
pip list:
Package Version
------------------------- --------------
aiohappyeyeballs 2.4.4
aiohttp 3.11.11
aiosignal 1.3.2
anyio 4.8.0
appnope 0.1.4
argon2-cffi 23.1.0
argon2-cffi-bindings 21.2.0
arrow 1.3.0
asciitree 0.3.3
asttokens 3.0.0
async-lru 2.0.4
async-timeout 5.0.1
attrs 24.3.0
babel 2.16.0
beautifulsoup4 4.12.3
bleach 6.2.0
ccfwidget 0.5.3
certifi 2024.12.14
cffi 1.17.1
charset-normalizer 3.4.1
click 8.1.8
cloudpickle 3.1.0
colorcet 3.1.0
comm 0.2.2
contourpy 1.3.1
cycler 0.12.1
dask 2024.12.1
debugpy 1.8.11
decorator 5.1.1
defusedxml 0.7.1
exceptiongroup 1.2.2
executing 2.1.0
fasteners 0.19
fastjsonschema 2.21.1
fonttools 4.55.3
fqdn 1.5.1
frozenlist 1.5.0
fsspec 2024.12.0
h11 0.14.0
httpcore 1.0.7
httpx 0.28.1
idna 3.10
importlib_metadata 8.5.0
ipydatawidgets 4.3.5
ipykernel 6.29.5
ipympl 0.9.6
ipython 8.21.0
ipython-genutils 0.2.0
ipytree 0.2.2
ipywidgets 7.8.5
isoduration 20.11.0
itk-core 5.4.0
itk-filtering 5.4.0
itk-meshtopolydata 0.11.0
itk-numerics 5.4.0
itkwidgets 0.32.5
jedi 0.19.2
Jinja2 3.1.5
json5 0.10.0
jsonpointer 3.0.0
jsonschema 4.23.0
jsonschema-specifications 2024.10.1
jupyter 1.1.1
jupyter_client 8.6.3
jupyter-console 6.6.3
jupyter_core 5.7.2
jupyter-events 0.11.0
jupyter-lsp 2.2.5
jupyter_server 2.15.0
jupyter_server_terminals 0.5.3
jupyterlab 4.3.4
jupyterlab_pygments 0.3.0
jupyterlab_server 2.27.3
jupyterlab_widgets 1.1.11
kiwisolver 1.4.8
locket 1.0.0
MarkupSafe 3.0.2
matplotlib 3.10.0
matplotlib-inline 0.1.7
mistune 3.1.0
multidict 6.1.0
nbclient 0.10.2
nbconvert 7.16.5
nbformat 5.10.4
nest-asyncio 1.6.0
notebook 6.4.13
notebook_shim 0.2.4
numcodecs 0.13.1
numpy 2.2.1
overrides 7.7.0
packaging 24.2
pandas 2.2.3
pandocfilters 1.5.1
parso 0.8.4
partd 1.4.2
pexpect 4.9.0
pillow 11.1.0
pip 24.3.1
platformdirs 4.3.6
prometheus_client 0.21.1
prompt_toolkit 3.0.48
propcache 0.2.1
psutil 6.1.1
ptyprocess 0.7.0
pure_eval 0.2.3
pycparser 2.22
Pygments 2.19.1
pyparsing 3.2.1
python-dateutil 2.9.0.post0
python-json-logger 3.2.1
pytz 2024.2
PyYAML 6.0.2
pyzmq 26.2.0
referencing 0.35.1
requests 2.32.3
rfc3339-validator 0.1.4
rfc3986-validator 0.1.1
rpds-py 0.22.3
Send2Trash 1.8.3
setuptools 75.6.0
six 1.17.0
sniffio 1.3.1
soupsieve 2.6
stack-data 0.6.3
terminado 0.18.1
tinycss2 1.4.0
tomli 2.2.1
toolz 1.0.0
tornado 6.4.2
traitlets 5.6.0
traittypes 0.2.1
types-python-dateutil 2.9.0.20241206
typing_extensions 4.12.2
tzdata 2024.2
uri-template 1.3.0
urllib3 2.3.0
wcwidth 0.2.13
webcolors 24.11.1
webencodings 0.5.1
websocket-client 1.8.0
wheel 0.45.1
widgetsnbextension 3.6.10
xarray 2025.1.0
yarl 1.18.3
zarr 2.18.3
zipp 3.21.0
zstandard 0.23.0