Accessing position data...
^CTraceback (most recent call last):
File "/Users/bdichter/dev/dandiset_notebooks/scratch/dandisets/000582/2025-03-25-2/tmp_scripts/access_dandi_subset.py", line 51, in <module>
pos_data = spatial_series.data[::stride]
~~~~~~~~~~~~~~~~~~~^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/lindi/LindiH5pyFile/LindiH5pyDataset.py", line 170, in __getitem__
return self._get_item_for_zarr(self._zarr_array, args)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/lindi/LindiH5pyFile/LindiH5pyDataset.py", line 219, in _get_item_for_zarr
return decode_references(zarr_array[selection])
~~~~~~~~~~^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/zarr/core.py", line 798, in __getitem__
result = self.get_basic_selection(pure_selection, fields=fields)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/zarr/core.py", line 924, in get_basic_selection
return self._get_basic_selection_nd(selection=selection, out=out, fields=fields)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/zarr/core.py", line 966, in _get_basic_selection_nd
return self._get_selection(indexer=indexer, out=out, fields=fields)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/zarr/core.py", line 1341, in _get_selection
self._chunk_getitems(
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/zarr/core.py", line 2182, in _chunk_getitems
cdatas = self.chunk_store.getitems(ckeys, contexts=contexts)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/zarr/_storage/store.py", line 179, in getitems
return {k: self[k] for k in keys if k in self}
~~~~^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/lindi/LindiH5pyFile/LindiReferenceFileSystemStore.py", line 138, in __getitem__
val = self._get_helper(key)
^^^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/lindi/LindiH5pyFile/LindiReferenceFileSystemStore.py", line 199, in _get_helper
val = _read_bytes_from_url_or_path(url_or_path, offset, length)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/lindi/LindiH5pyFile/LindiReferenceFileSystemStore.py", line 332, in _read_bytes_from_url_or_path
response = requests.get(url_resolved, headers=headers)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/requests/api.py", line 73, in get
return request("get", url, params=params, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/requests/api.py", line 59, in request
return session.request(method=method, url=url, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/requests/sessions.py", line 589, in request
resp = self.send(prep, **send_kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/requests/sessions.py", line 703, in send
r = adapter.send(request, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/requests/adapters.py", line 667, in send
resp = conn.urlopen(
^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/urllib3/connectionpool.py", line 787, in urlopen
response = self._make_request(
^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/urllib3/connectionpool.py", line 534, in _make_request
response = conn.getresponse()
^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/site-packages/urllib3/connection.py", line 516, in getresponse
httplib_response = super().getresponse()
^^^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/http/client.py", line 1430, in getresponse
response.begin()
File "/Users/bdichter/miniconda3/lib/python3.12/http/client.py", line 331, in begin
version, status, reason = self._read_status()
^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/http/client.py", line 292, in _read_status
line = str(self.fp.readline(_MAXLINE + 1), "iso-8859-1")
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/socket.py", line 720, in readinto
return self._sock.recv_into(b)
^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/ssl.py", line 1251, in recv_into
return self.read(nbytes, buffer)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/bdichter/miniconda3/lib/python3.12/ssl.py", line 1103, in read
return self._sslobj.read(len, buffer)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
KeyboardInterrupt
sys:1: DeprecationWarning: Call to deprecated function (or staticmethod) _destroy.
