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minor schema update with (deprecation warnings)
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+18
-17
lines changed

6 files changed

+18
-17
lines changed

schema/core/nwb.behavior.yaml

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@@ -19,7 +19,7 @@ groups:
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spatial dimensions]
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datasets:
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- name: data
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dtype: float
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dtype: numeric
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doc: 2-D array storing position or direction relative to some reference frame.
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attributes:
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- name: unit

schema/core/nwb.ecephys.yaml

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@@ -94,18 +94,18 @@ groups:
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- null
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- neurodata_type_def: ClusterWaveforms
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neurodata_type_inc: NWBDataInterface
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doc: 'The mean waveform shape, including standard deviation, of the different clusters.
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Ideally, the waveform analysis should be performed on data that is only high-pass
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filtered. This is a separate module because it is expected to require updating.
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For example, IMEC probes may require different storage requirements to store/display
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mean waveforms, requiring a new interface or an extension of this one.'
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doc: 'DEPRECATED The mean waveform shape, including standard deviation, of the
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different clusters. Ideally, the waveform analysis should be performed on data that
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is only high-pass filtered. This is a separate module because it is expected to require
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updating. For example, IMEC probes may require different storage requirements to
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store/display mean waveforms, requiring a new interface or an extension of this one.'
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attributes:
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- name: help
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dtype: text
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doc: Value is 'Mean waveform shape of clusters. Waveforms should be high-pass
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filtered (ie, not the same bandpass filter used waveform analysis and clustering)'
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value: Mean waveform shape of clusters. Waveforms should be high-pass filtered
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(ie, not the same bandpass filter used waveform analysis and clustering)
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value: DEPRECATED Mean waveform shape of clusters. Waveforms should be high-pass
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filtered (ie, not the same bandpass filter used waveform analysis and clustering)
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datasets:
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- name: waveform_filtering
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dtype: text
@@ -138,15 +138,15 @@ groups:
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default_name: ClusterWaveforms
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- neurodata_type_def: Clustering
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neurodata_type_inc: NWBDataInterface
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doc: Clustered spike data, whether from automatic clustering tools (e.g., klustakwik)
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or as a result of manual sorting.
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doc: DEPRECATED Clustered spike data, whether from automatic clustering tools (e.g.,
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klustakwik) or as a result of manual sorting.
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attributes:
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- name: help
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dtype: text
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doc: Value is 'Clustered spike data, whether from automatic clustering tools (eg,
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klustakwik) or as a result of manual sorting'
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value: Clustered spike data, whether from automatic clustering tools (eg, klustakwik)
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or as a result of manual sorting
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value: DEPRECATED Clustered spike data, whether from automatic clustering tools
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(eg, klustakwik) or as a result of manual sorting
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datasets:
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- name: description
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dtype: text

schema/core/nwb.misc.yaml

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is impractical
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datasets:
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- name: data
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dtype: float32
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dtype: numeric
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doc: Values of each feature at each time.
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attributes:
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- name: unit
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doc: Holds spectral analysis of a timeseries. For instance of LFP or a speech signal
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datasets:
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- name: data
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dtype: float
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dtype: numeric
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doc: The data goes here
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shape:
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- null

schema/core/nwb.namespace.yaml

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@@ -24,4 +24,4 @@ namespaces:
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- source: nwb.ogen.yaml
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- source: nwb.ophys.yaml
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- source: nwb.retinotopy.yaml
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version: 2.0.0b
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version: 2.0.0

schema/core/nwb.ogen.yaml

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value: Optogenetic stimulus
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datasets:
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- name: data
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dtype: float32
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dtype: numeric
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doc: Applied power for optogenetic stimulus.
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attributes:
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- name: unit

schema/core/nwb.ophys.yaml

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of data[] should correspond to the signal from one ROI
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datasets:
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- name: data
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dtype: float32
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dtype: numeric
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doc: Signals from ROIs
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dims:
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- - num_times
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or vectors needed to rotate to common anotomical axis (eg, AP/DV/ML). COMMENT:
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This field is necessary to interpret manifold. If manifold is not present then
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this field is not required'
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quantity: '?'
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groups:
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- neurodata_type_def: OpticalChannel
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neurodata_type_inc: NWBContainer

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