Skip to content

icephys.yaml: Some entries miss unit attribute #410

New issue
New issue
Open
#446
Open
icephys.yaml: Some entries miss unit attribute#410
#446
Labels
category: bugerrors in the code or code behaviorpriority: mediumnon-critical problem and/or affecting only a small set of NWB users
@t-b

Description

@t-b
t-b
opened on Feb 9, 2020

The CurrentClampSeries properties

nwb-schema/core/nwb.icephys.yaml

Lines 53 to 80 in 571bfb0

- name: bias_current
dtype: float32
doc: Bias current, in amps.
quantity: '?'
- name: bridge_balance
dtype: float32
doc: Bridge balance, in ohms.
quantity: '?'
- name: capacitance_compensation
dtype: float32
doc: Capacitance compensation, in farads.
quantity: '?'
- neurodata_type_def: IZeroClampSeries
neurodata_type_inc: CurrentClampSeries
doc: Voltage data from an intracellular recording when all current
and amplifier settings are off (i.e., CurrentClampSeries fields will be zero).
There is no CurrentClampStimulusSeries associated with an IZero series because
the amplifier is disconnected and no stimulus can reach the cell.
datasets:
- name: bias_current
dtype: float32
value: 0.0
doc: Bias current, in amps, fixed to 0.0.
- name: bridge_balance
dtype: float32
value: 0.0
doc: Bridge balance, in ohms, fixed to 0.0.
don't have a units attributes whereas

nwb-schema/core/nwb.icephys.yaml

Lines 115 to 130 in 571bfb0

- name: capacitance_fast
dtype: float32
doc: Fast capacitance, in farads.
quantity: '?'
attributes:
- name: unit
dtype: text
value: farads
doc: Unit of measurement for capacitance_fast, which is fixed to 'farads'.
- name: capacitance_slow
dtype: float32
doc: Slow capacitance, in farads.
quantity: '?'
attributes:
- name: unit
dtype: text
do have unit attributes. This is inconsistent.

Metadata

Metadata

Assignees

No one assigned

    Labels

    category: bugerrors in the code or code behaviorpriority: mediumnon-critical problem and/or affecting only a small set of NWB users

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions