Add python 3.13 support (#564)

* add python 3.13 support

* add cross-platform abspath support

* update CHANGELOG

Author: stephprince

.github/ISSUE_TEMPLATE/bug_report.yml

@@ -40,6 +40,7 @@ body:
         - "3.10"
         - "3.11"
         - "3.12"
+        - "3.13"
   - type: dropdown
     id: streaming
     attributes:

.github/workflows/dandi-dev-live-services.yml

@@ -16,7 +16,7 @@ jobs:
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.12"
+          python-version: "3.13"
 
       - name: Test against DANDI dev
         run: |

.github/workflows/dandi-dev.yml

@@ -19,7 +19,7 @@ jobs:
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.12"
+          python-version: "3.13"
 
       - name: Test local branch of NWB Inspector against DANDI dev branch
         run: |

.github/workflows/read-nwbfile-tests.yml

@@ -16,7 +16,7 @@ jobs:
       fail-fast: false
       matrix:
         os: ["ubuntu-latest", "windows-latest"]  # TODO: update mac and streaming methods
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
     steps:
       - uses: conda-incubator/setup-miniconda@v3
         with:

.github/workflows/streaming-tests.yml

@@ -13,7 +13,7 @@ jobs:
       fail-fast: false
       matrix:
         os: ["ubuntu-latest", "windows-latest"]  # TODO: update mac and streaming methods
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
     steps:
       - uses: actions/checkout@v4
       - run: git fetch --prune --unshallow --tags
@@ -59,7 +59,7 @@ jobs:
       fail-fast: false
       matrix:
         os: ["ubuntu-latest"]
-        python-version: ["3.12"]
+        python-version: ["3.13"]
     steps:
       - uses: actions/checkout@v4
       - run: git fetch --prune --unshallow --tags

.github/workflows/testing.yml

@@ -13,7 +13,7 @@ jobs:
       fail-fast: false
       matrix:
         os: ["ubuntu-latest", "macos-13", "windows-latest"]
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
     env:
       TESTING_FILES_FOLDER_PATH: ./204919/testing_files/
     steps:
@@ -53,7 +53,7 @@ jobs:
       fail-fast: false
       matrix:
         os: ["ubuntu-latest"]
-        python-version: ["3.12"]
+        python-version: ["3.13"]
     steps:
       - uses: actions/checkout@v4
       - run: git fetch --prune --unshallow --tags

CHANGELOG.md

@@ -2,6 +2,7 @@
 
 ### Improvements
 * Added support for PyNWB 3.0 [#557](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/557)
+* Added support for Python 3.13 [#564](https://github.com/NeurodataWithoutBorders/nwbinspector/pull/564)
 
 
 # v0.6.2

docs/user_guide/installation.rst

@@ -6,7 +6,7 @@ If you haven't checked it out already, please read the :nwb-overview:`NWB Overvi
 
 The NWBInspector tool offers convenient command-line usage via any standard Conda or Python terminal.
 
-To install the package in any generic Python v3.9-v3.12 environment, simply type
+To install the package in any generic Python v3.9-v3.13 environment, simply type
 
 ::
 

pyproject.toml

@@ -26,6 +26,7 @@ classifiers = [
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
     "Operating System :: POSIX :: Linux",
     "Operating System :: Microsoft :: Windows",
     "Operating System :: MacOS",

src/nwbinspector/checks/_image_series.py

@@ -1,7 +1,6 @@
 """Check functions specific to ImageSeries."""
 
-import ntpath
-from pathlib import Path
+from pathlib import Path, PurePosixPath, PureWindowsPath
 from typing import Iterable, Optional
 
 from pynwb.image import ImageSeries
@@ -45,7 +44,7 @@ def check_image_series_external_file_relative(image_series: ImageSeries) -> Opti
         return None
     for file_path in image_series.external_file:
         file_path = file_path.decode() if isinstance(file_path, bytes) else file_path
-        if ntpath.isabs(file_path):  # ntpath required for cross-platform detection
+        if PureWindowsPath(file_path).is_absolute() or PurePosixPath(file_path).is_absolute():
             yield InspectorMessage(
                 message=(
                     f"The external file '{file_path}' is not a relative path. "