Add 'target_tables' kwarg to DynamicTable subclasses

Author: rly

src/pynwb/epoch.py

@@ -28,7 +28,7 @@ class TimeIntervals(DynamicTable):
     @docval({'name': 'name', 'type': str, 'doc': 'name of this TimeIntervals'},  # required
             {'name': 'description', 'type': str, 'doc': 'Description of this TimeIntervals',
              'default': "experimental intervals"},
-            *get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames'),
+            *get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames', 'target_tables'),
             allow_positional=AllowPositional.WARNING,)
     def __init__(self, **kwargs):
         super().__init__(**kwargs)

src/pynwb/icephys.py

@@ -422,7 +422,7 @@ class IntracellularElectrodesTable(DynamicTable):
          'table': False},
     )
 
-    @docval(*get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames'),
+    @docval(*get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames', 'target_tables'),
             allow_positional=AllowPositional.WARNING,)
     def __init__(self, **kwargs):
         # Define defaultb name and description settings
@@ -452,7 +452,7 @@ class IntracellularStimuliTable(DynamicTable):
          'class': TimeSeriesReferenceVectorData},
     )
 
-    @docval(*get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames'),
+    @docval(*get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames', 'target_tables'),
             allow_positional=AllowPositional.WARNING,)
     def __init__(self, **kwargs):
         # Define defaultb name and description settings
@@ -476,7 +476,7 @@ class IntracellularResponsesTable(DynamicTable):
          'class': TimeSeriesReferenceVectorData},
     )
 
-    @docval(*get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames'),
+    @docval(*get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames', 'target_tables'),
             allow_positional=AllowPositional.WARNING,)
     def __init__(self, **kwargs):
         # Define defaultb name and description settings
@@ -493,7 +493,8 @@ class IntracellularRecordingsTable(AlignedDynamicTable):
     a single simultaneous_recording. Each row in the table represents a single recording consisting
     typically of a stimulus and a corresponding response.
     """
-    @docval(*get_docval(AlignedDynamicTable.__init__, 'id', 'columns', 'colnames', 'category_tables', 'categories'),
+    @docval(*get_docval(AlignedDynamicTable.__init__, 'id', 'columns', 'colnames',
+            'category_tables', 'categories', 'target_tables'),
             allow_positional=AllowPositional.WARNING,)
     def __init__(self, **kwargs):
         kwargs['name'] = 'intracellular_recordings'
@@ -782,7 +783,7 @@ class SimultaneousRecordingsTable(DynamicTable):
                     'reading the Container from file as the table attribute is already populated in this case '
                     'but otherwise this is required.',
              'default': None},
-            *get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames'),
+            *get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames', 'target_tables'),
             allow_positional=AllowPositional.WARNING,)
     def __init__(self, **kwargs):
         intracellular_recordings_table = popargs('intracellular_recordings_table', kwargs)
@@ -842,7 +843,7 @@ class SequentialRecordingsTable(DynamicTable):
                     'column indexes. May be None when reading the Container from file as the '
                     'table attribute is already populated in this case but otherwise this is required.',
              'default': None},
-            *get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames'),
+            *get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames', 'target_tables'),
             allow_positional=AllowPositional.WARNING,)
     def __init__(self, **kwargs):
         simultaneous_recordings_table = popargs('simultaneous_recordings_table', kwargs)
@@ -900,7 +901,7 @@ class RepetitionsTable(DynamicTable):
                     'be None when reading the Container from file as the table attribute is already populated '
                     'in this case but otherwise this is required.',
              'default': None},
-            *get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames'),
+            *get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames', 'target_tables'),
             allow_positional=AllowPositional.WARNING,)
     def __init__(self, **kwargs):
         sequential_recordings_table = popargs('sequential_recordings_table', kwargs)
@@ -953,7 +954,7 @@ class ExperimentalConditionsTable(DynamicTable):
              'type': RepetitionsTable,
              'doc': 'the RepetitionsTable table that the repetitions column indexes',
              'default': None},
-            *get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames'),
+            *get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames', 'target_tables'),
             allow_positional=AllowPositional.WARNING,)
     def __init__(self, **kwargs):
         repetitions_table = popargs('repetitions_table', kwargs)

src/pynwb/misc.py

@@ -165,7 +165,7 @@ class Units(DynamicTable):
     )
 
     @docval({'name': 'name', 'type': str, 'doc': 'Name of this Units interface', 'default': 'Units'},
-            *get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames'),
+            *get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames', 'target_tables'),
             {'name': 'description', 'type': str, 'doc': 'a description of what is in this table', 'default': None},
             {'name': 'electrode_table', 'type': DynamicTable,
              'doc': 'the table that the *electrodes* column indexes', 'default': None},

src/pynwb/ophys.py

@@ -331,7 +331,7 @@ class PlaneSegmentation(DynamicTable):
             {'name': 'name', 'type': str, 'doc': 'name of PlaneSegmentation.', 'default': None},
             {'name': 'reference_images', 'type': (ImageSeries, list, dict, tuple), 'default': None,
              'doc': 'One or more image stacks that the masks apply to (can be oneelement stack).'},
-            *get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames'),
+            *get_docval(DynamicTable.__init__, 'id', 'columns', 'colnames', 'target_tables'),
             allow_positional=AllowPositional.WARNING,)
     def __init__(self, **kwargs):
         imaging_plane, reference_images = popargs('imaging_plane', 'reference_images', kwargs)