Prepare for PyNWB release 3.1.0 (#2110)

* update CHANGELOG

* update requirements

* update doc requirements

Author: stephprince

CHANGELOG.md

@@ -1,6 +1,6 @@
 # PyNWB Changelog
 
-## Upcoming
+## PyNWB 3.1.0 (July 8, 2025)
 
 ### Breaking changes
 - Removed unused functions `prepend_string` and `_not_parent` in `core.py`, `_not_parent` in `file.py`, and `NWBBaseTypeMapper.get_nwb_file` in `io/core.py` @oruebel [#2036](https://github.com/NeurodataWithoutBorders/pynwb/pull/2036)

environment-ros3.yml

@@ -13,9 +13,9 @@ dependencies:
   - python-dateutil==2.9.0
   - setuptools
   - pytest==7.4.3  # pin to pytest < 8 because of incompatibilities to be addressed
-  - fsspec==2024.12.0
+  - fsspec==2025.5.1
   - requests==2.32.3
-  - aiohttp==3.11.11
+  - aiohttp==3.12.13
   - pip
   - pip:
     - remfile==0.1.13

requirements-doc.txt

@@ -12,7 +12,7 @@ hdf5plugin
 dandi>=0.46.6
 hdmf-zarr>=0.3.0
 zarr<3  # limited to zarr<3 until hdmf-zarr resolves issues with zarr 3.0
-linkml-runtime==1.8.3; python_version >= "3.10"
-schemasheets==0.3.1; python_version >= "3.10"
-oaklib==0.6.18; python_version >= "3.10"
+linkml-runtime==1.9.3; python_version >= "3.10"
+schemasheets==0.4.0; python_version >= "3.10"
+oaklib==0.6.23; python_version >= "3.10"
 pooch

requirements-opt.txt

@@ -1,11 +1,11 @@
-linkml-runtime==1.8.3
-schemasheets==0.3.1
-oaklib==0.6.18
+linkml-runtime==1.9.3
+schemasheets==0.4.0
+oaklib==0.6.23
 
 # for streaming tests
-fsspec==2024.12.0
+fsspec==2025.5.1
 requests==2.32.4
-aiohttp==3.11.11
+aiohttp==3.12.13
 
 # For read_nwb tests
 hdmf-zarr