diff --git a/OASIS.yml b/OASIS.yml new file mode 100644 index 0000000..7673d34 --- /dev/null +++ b/OASIS.yml @@ -0,0 +1,7 @@ +--- +config: + version: 1.0 +data: + url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/OASIS.tar.gz?dl=1 + action: expand + destination: data diff --git a/anisotropic_nets_brats_challenge_model_zoo.yml b/anisotropic_nets_brats_challenge_model_zoo.yml new file mode 100644 index 0000000..38dbcb5 --- /dev/null +++ b/anisotropic_nets_brats_challenge_model_zoo.yml @@ -0,0 +1,18 @@ +--- +config: + version: 1.0 +data: + local_id: BRATS_examples + url: https://www.dropbox.com/s/jyxnm3cqokjghje/BRATS_examples.tar.gz?dl=1 + action: expand + destination: data +weights: + local_id: anisotropic_nets_brats_challenge + url: https://www.dropbox.com/s/cnbsszxa418xc1x/anisotropic_nets_brats_challenge_weights.tar.gz?dl=1 + action: expand + destination: models +network_inference_config: + local_id: anisotropic_nets_brats_challenge + url: https://www.dropbox.com/s/il6uo6bwznuxd6k/anisotropic_nets_brats_challenge_code_config.tar.gz?dl=1 + action: expand + destination: extensions diff --git a/anisotropic_nets_brats_challenge_model_zoo_code.yml b/anisotropic_nets_brats_challenge_model_zoo_code.yml new file mode 100644 index 0000000..1446bb0 --- /dev/null +++ b/anisotropic_nets_brats_challenge_model_zoo_code.yml @@ -0,0 +1,8 @@ +--- +config: + version: 1.0 +network_inference_config: + local_id: anisotropic_nets_brats_challenge + url: https://www.dropbox.com/s/il6uo6bwznuxd6k/anisotropic_nets_brats_challenge_code_config.tar.gz?dl=1 + action: expand + destination: extensions diff --git a/anisotropic_nets_brats_challenge_model_zoo_data.yml b/anisotropic_nets_brats_challenge_model_zoo_data.yml new file mode 100644 index 0000000..1b10226 --- /dev/null +++ b/anisotropic_nets_brats_challenge_model_zoo_data.yml @@ -0,0 +1,8 @@ +--- +config: + version: 1.0 +data: + local_id: BRATS_examples + url: https://www.dropbox.com/s/jyxnm3cqokjghje/BRATS_examples.tar.gz?dl=1 + action: expand + destination: data diff --git a/anisotropic_nets_brats_challenge_model_zoo_weights.yml b/anisotropic_nets_brats_challenge_model_zoo_weights.yml new file mode 100644 index 0000000..f401bba --- /dev/null +++ b/anisotropic_nets_brats_challenge_model_zoo_weights.yml @@ -0,0 +1,8 @@ +--- +config: + version: 1.0 +weights: + local_id: anisotropic_nets_brats_challenge + url: https://www.dropbox.com/s/cnbsszxa418xc1x/anisotropic_nets_brats_challenge_weights.tar.gz?dl=1 + action: expand + destination: models diff --git a/autocontext_mr_ct_model_zoo.yml b/autocontext_mr_ct_model_zoo.yml new file mode 100644 index 0000000..263c1b2 --- /dev/null +++ b/autocontext_mr_ct_model_zoo.yml @@ -0,0 +1,18 @@ +--- +config: + version: 1.0 +data: + local_id: mr_ct_regression + url: https://www.dropbox.com/s/lv31fultntgw66t/mr_ct_regression_model_zoo_data.tar.gz?dl=1 + action: expand + destination: data +error_maps: + local_id: autocontext_mr_ct + url: https://www.dropbox.com/s/xx5ahj4m12bf67h/autocontext_mr_ct_initial_maps.tar.gz?dl=1 + action: expand + destination: models +code: + local_id: autocontext_mr_ct + url: https://www.dropbox.com/s/746d45nkk41enjz/autocontext_mr_ct_model_zoo_config.tar.gz?dl=1 + action: expand + destination: extensions diff --git a/autocontext_mr_ct_model_zoo_config.yml b/autocontext_mr_ct_model_zoo_config.yml new file mode 100644 index 0000000..b83b047 --- /dev/null +++ b/autocontext_mr_ct_model_zoo_config.yml @@ -0,0 +1,8 @@ +--- +config: + version: 1.0 +code: + local_id: autocontext_mr_ct + url: https://www.dropbox.com/s/746d45nkk41enjz/autocontext_mr_ct_model_zoo_config.tar.gz?dl=1 + action: expand + destination: extensions diff --git a/autocontext_mr_ct_model_zoo_initial_maps.yml b/autocontext_mr_ct_model_zoo_initial_maps.yml new file mode 100644 index 0000000..2174d6d --- /dev/null +++ b/autocontext_mr_ct_model_zoo_initial_maps.yml @@ -0,0 +1,8 @@ +--- +config: + version: 1.0 +error_maps: + local_id: autocontext_mr_ct + url: https://www.dropbox.com/s/xx5ahj4m12bf67h/autocontext_mr_ct_initial_maps.tar.gz?dl=1 + action: expand + destination: models diff --git a/cell_count_model_zoo.yml b/cell_count_model_zoo.yml new file mode 100644 index 0000000..5ef3a23 --- /dev/null +++ b/cell_count_model_zoo.yml @@ -0,0 +1,18 @@ +--- +config: + version: 1.0 +code: + local_id: cell_count + url: https://www.dropbox.com/s/s78597i22y0oiwb/cell_count_code_config.tar.gz?dl=1 + action: expand + destination: extensions +weights: + local_id: cell_count + url: https://www.dropbox.com/s/jajbskpkhpycnep/cell_count_weights.tar.gz?dl=1 + action: expand + destination: models +data: + local_id: cell_count + url: https://www.dropbox.com/s/sowayyjmbaap6ot/cell_count_data.tar.gz?dl=1 + action: expand + destination: data diff --git a/cell_count_model_zoo_code.yml b/cell_count_model_zoo_code.yml new file mode 100644 index 0000000..08e3a87 --- /dev/null +++ b/cell_count_model_zoo_code.yml @@ -0,0 +1,13 @@ +--- +config: + version: 1.0 +code: + local_id: cell_count + url: https://www.dropbox.com/s/s78597i22y0oiwb/cell_count_code_config.tar.gz?dl=1 + action: expand + destination: extensions +data: + local_id: cell_count + url: https://www.dropbox.com/s/sowayyjmbaap6ot/cell_count_data.tar.gz?dl=1 + action: expand + destination: data diff --git a/cell_count_model_zoo_weights.yml b/cell_count_model_zoo_weights.yml new file mode 100644 index 0000000..e1275db --- /dev/null +++ b/cell_count_model_zoo_weights.yml @@ -0,0 +1,8 @@ +--- +config: + version: 1.0 +weights: + local_id: cell_count + url: https://www.dropbox.com/s/jajbskpkhpycnep/cell_count_weights.tar.gz?dl=1 + action: expand + destination: models diff --git a/deepmedic.yml b/deepmedic.yml new file mode 100644 index 0000000..485b371 --- /dev/null +++ b/deepmedic.yml @@ -0,0 +1,7 @@ +--- +config: + version: 1.0 +download: + url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/deepmedic.tar.gz + action: expand + destination: examples diff --git a/default.yml b/default.yml new file mode 100644 index 0000000..ce0cd3b --- /dev/null +++ b/default.yml @@ -0,0 +1,7 @@ +--- +config: + version: 1.0 +download: + url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/default.tar.gz + action: expand + destination: examples diff --git a/default_multimodal.yml b/default_multimodal.yml new file mode 100644 index 0000000..ab7b10d --- /dev/null +++ b/default_multimodal.yml @@ -0,0 +1,7 @@ +--- +config: + version: 1.0 +download: + url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/default_multimodal.tar.gz + action: expand + destination: examples diff --git a/dense_vnet_abdominal_ct_model_zoo.yml b/dense_vnet_abdominal_ct_model_zoo.yml new file mode 100644 index 0000000..e9b73e1 --- /dev/null +++ b/dense_vnet_abdominal_ct_model_zoo.yml @@ -0,0 +1,18 @@ +--- +config: + version: 1.0 +code: + local_id: dense_vnet_abdominal_ct + url: https://www.dropbox.com/s/ptu46os7lfmj0dl/dense_vnet_abdominal_ct_code_config.tar.gz?dl=1 + action: expand + destination: extensions +data: + local_id: dense_vnet_abdominal_ct + url: https://www.dropbox.com/s/5fk0m9v12if5da9/dense_vnet_abdominal_ct_model_zoo_data.tar.gz?dl=1 + action: expand + destination: data +weights: + local_id: dense_vnet_abdominal_ct + url: https://www.dropbox.com/s/zvc8stqo6womvou/dense_vnet_abdominal_ct_weights.tar.gz?dl=1 + action: expand + destination: models diff --git a/dense_vnet_abdominal_ct_model_zoo_code.yml b/dense_vnet_abdominal_ct_model_zoo_code.yml new file mode 100644 index 0000000..252912f --- /dev/null +++ b/dense_vnet_abdominal_ct_model_zoo_code.yml @@ -0,0 +1,8 @@ +--- +config: + version: 1.0 +code: + local_id: dense_vnet_abdominal_ct + url: https://www.dropbox.com/s/ptu46os7lfmj0dl/dense_vnet_abdominal_ct_code_config.tar.gz?dl=1 + action: expand + destination: extensions diff --git a/dense_vnet_abdominal_ct_model_zoo_data.yml b/dense_vnet_abdominal_ct_model_zoo_data.yml new file mode 100644 index 0000000..566002d --- /dev/null +++ b/dense_vnet_abdominal_ct_model_zoo_data.yml @@ -0,0 +1,8 @@ +--- +config: + version: 1.0 +data: + local_id: dense_vnet_abdominal_ct + url: https://www.dropbox.com/s/5fk0m9v12if5da9/dense_vnet_abdominal_ct_model_zoo_data.tar.gz?dl=1 + action: expand + destination: data diff --git a/dense_vnet_abdominal_ct_model_zoo_weights.yml b/dense_vnet_abdominal_ct_model_zoo_weights.yml new file mode 100644 index 0000000..9698ad1 --- /dev/null +++ b/dense_vnet_abdominal_ct_model_zoo_weights.yml @@ -0,0 +1,8 @@ +--- +config: + version: 1.0 +weights: + local_id: dense_vnet_abdominal_ct + url: https://www.dropbox.com/s/zvc8stqo6womvou/dense_vnet_abdominal_ct_weights.tar.gz?dl=1 + action: expand + destination: models diff --git a/highres3dnet_brain_parcellation_model_zoo.yml b/highres3dnet_brain_parcellation_model_zoo.yml new file mode 100644 index 0000000..86c449a --- /dev/null +++ b/highres3dnet_brain_parcellation_model_zoo.yml @@ -0,0 +1,18 @@ +--- +config: + version: 1.0 +data: + local_id: OASIS + url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/OASIS.tar.gz?dl=1 + action: expand + destination: data +weights: + local_id: highres3dnet_brain_parcellation + url: https://www.dropbox.com/s/nxg2ixs9rh1p9ri/highres3dnet_brain_parcellation_weights.tar.gz?dl=1 + action: expand + destination: models +network_inference_config: + local_id: highres3dnet_brain_parcellation + url: https://www.dropbox.com/s/r2q08q1kkd534p4/highres3dnet_brain_parcellation_config.tar.gz?dl=1 + action: expand + destination: extensions diff --git a/highres3dnet_brain_parcellation_model_zoo_code.yml b/highres3dnet_brain_parcellation_model_zoo_code.yml new file mode 100644 index 0000000..2b52c0b --- /dev/null +++ b/highres3dnet_brain_parcellation_model_zoo_code.yml @@ -0,0 +1,8 @@ +--- +config: + version: 1.0 +network_inference_config: + local_id: highres3dnet_brain_parcellation + url: https://www.dropbox.com/s/r2q08q1kkd534p4/highres3dnet_brain_parcellation_config.tar.gz?dl=1 + action: expand + destination: extensions diff --git a/highres3dnet_brain_parcellation_model_zoo_weights.yml b/highres3dnet_brain_parcellation_model_zoo_weights.yml new file mode 100644 index 0000000..82b00e1 --- /dev/null +++ b/highres3dnet_brain_parcellation_model_zoo_weights.yml @@ -0,0 +1,8 @@ +--- +config: + version: 1.0 +weights: + local_id: highres3dnet_brain_parcellation + url: https://www.dropbox.com/s/nxg2ixs9rh1p9ri/highres3dnet_brain_parcellation_weights.tar.gz?dl=1 + action: expand + destination: models diff --git a/hybrid_mr_ct_model_zoo.yml b/hybrid_mr_ct_model_zoo.yml new file mode 100644 index 0000000..0a808fd --- /dev/null +++ b/hybrid_mr_ct_model_zoo.yml @@ -0,0 +1,18 @@ +--- +config: + version: 1.0 +data: + local_id: mr_ct_regression + url: https://www.dropbox.com/s/lv31fultntgw66t/mr_ct_regression_model_zoo_data.tar.gz?dl=1 + action: expand + destination: data +error_maps: + local_id: isampler_autocontext_mr_ct + url: https://www.dropbox.com/s/xx5ahj4m12bf67h/autocontext_mr_ct_initial_maps.tar.gz?dl=1 + action: expand + destination: models +code: + local_id: isampler_autocontext_mr_ct + url: https://www.dropbox.com/s/mq4pgey1zfeai24/isampler_autocontext_mr_ct_model_zoo_config.tar.gz?dl=1 + action: expand + destination: extensions diff --git a/monomodal_parcellation.yml b/monomodal_parcellation.yml new file mode 100644 index 0000000..7654315 --- /dev/null +++ b/monomodal_parcellation.yml @@ -0,0 +1,7 @@ +--- +config: + version: 1.0 +download: + url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/monomodal_parcellation.tar.gz + action: expand + destination: data diff --git a/mr_ct_regression_model_zoo.yml b/mr_ct_regression_model_zoo.yml new file mode 100644 index 0000000..90c5591 --- /dev/null +++ b/mr_ct_regression_model_zoo.yml @@ -0,0 +1,18 @@ +--- +config: + version: 1.0 +data: + local_id: mr_ct_regression + url: https://www.dropbox.com/s/lv31fultntgw66t/mr_ct_regression_model_zoo_data.tar.gz?dl=1 + action: expand + destination: data +code: + local_id: mr_ct_regression + url: https://www.dropbox.com/s/ll2kr19suwlof6g/mr_ct_regression_model_zoo_config.tar.gz?dl=1 + action: expand + destination: extensions +error_maps: + local_id: mr_ct_regression + url: https://www.dropbox.com/s/9hp5qglttswecmg/mr_ct_regression_model_zoo_initial_error_maps.tar.gz?dl=1 + action: expand + destination: models diff --git a/mr_ct_regression_model_zoo_config.yml b/mr_ct_regression_model_zoo_config.yml new file mode 100644 index 0000000..e557c91 --- /dev/null +++ b/mr_ct_regression_model_zoo_config.yml @@ -0,0 +1,8 @@ +--- +config: + version: 1.0 +code: + local_id: mr_ct_regression + url: https://www.dropbox.com/s/ll2kr19suwlof6g/mr_ct_regression_model_zoo_config.tar.gz?dl=1 + action: expand + destination: extensions diff --git a/mr_ct_regression_model_zoo_data.yml b/mr_ct_regression_model_zoo_data.yml new file mode 100644 index 0000000..23c928e --- /dev/null +++ b/mr_ct_regression_model_zoo_data.yml @@ -0,0 +1,8 @@ +--- +config: + version: 1.0 +data: + local_id: mr_ct_regression + url: https://www.dropbox.com/s/lv31fultntgw66t/mr_ct_regression_model_zoo_data.tar.gz?dl=1 + action: expand + destination: data diff --git a/mr_ct_regression_model_zoo_initial_error_maps.yml b/mr_ct_regression_model_zoo_initial_error_maps.yml new file mode 100644 index 0000000..183e354 --- /dev/null +++ b/mr_ct_regression_model_zoo_initial_error_maps.yml @@ -0,0 +1,8 @@ +--- +config: + version: 1.0 +weights: + local_id: mr_ct_regression + url: https://www.dropbox.com/s/9hp5qglttswecmg/mr_ct_regression_model_zoo_initial_error_maps.tar.gz?dl=1 + action: expand + destination: models diff --git a/multimodal_BRATS.yml b/multimodal_BRATS.yml new file mode 100644 index 0000000..67ac19c --- /dev/null +++ b/multimodal_BRATS.yml @@ -0,0 +1,7 @@ +--- +config: + version: 1.0 +download: + url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/multimodal_BRATS.tar.gz + action: expand + destination: data diff --git a/scalenet.yml b/scalenet.yml new file mode 100644 index 0000000..8589287 --- /dev/null +++ b/scalenet.yml @@ -0,0 +1,7 @@ +--- +config: + version: 1.0 +download: + url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/scalenet.tar.gz + action: expand + destination: examples diff --git a/testing.yml b/testing.yml new file mode 100644 index 0000000..948fe3d --- /dev/null +++ b/testing.yml @@ -0,0 +1,11 @@ +--- +config: + version: 1.1 +data: + url: https://www.dropbox.com/s/5p5fdgy053tgmdj/testing_data_v0_3.tar.gz?dl=1 + action: expand + destination: data +code: + url: https://www.dropbox.com/s/2g8jr3wq8rw5xtv/testing_code_v0_3.tar.gz?dl=1 + action: expand + destination: extensions diff --git a/testing_data.yml b/testing_data.yml new file mode 100644 index 0000000..4fee50e --- /dev/null +++ b/testing_data.yml @@ -0,0 +1,7 @@ +--- +config: + version: 1.1 +download: + url: https://www.dropbox.com/s/5p5fdgy053tgmdj/testing_data_v0_3.tar.gz?dl=1 + action: expand + destination: data diff --git a/ultrasound_simulator_gan_model_zoo.yml b/ultrasound_simulator_gan_model_zoo.yml new file mode 100644 index 0000000..0147328 --- /dev/null +++ b/ultrasound_simulator_gan_model_zoo.yml @@ -0,0 +1,18 @@ +--- +config: + version: 1.0 +data: + local_id: ultrasound_simulator_gan + url: https://www.dropbox.com/s/hu1i8yjdptwq6wj/ultrasound_simulator_gan_model_zoo_data.tar.gz?dl=1 + action: expand + destination: data +weights: + local_id: ultrasound_simulator_gan + url: https://www.dropbox.com/s/95smm4i464nwczm/ultrasound_simulator_gan_weights.tar.gz?dl=1 + action: expand + destination: models +code: + local_id: ultrasound_simulator_gan + url: https://www.dropbox.com/s/089l4ixd2k7fiyy/ultrasound_simulator_gan_code.tar.gz?dl=1 + action: expand + destination: extensions diff --git a/ultrasound_simulator_gan_model_zoo_code.yml b/ultrasound_simulator_gan_model_zoo_code.yml new file mode 100644 index 0000000..618411c --- /dev/null +++ b/ultrasound_simulator_gan_model_zoo_code.yml @@ -0,0 +1,8 @@ +--- +config: + version: 1.0 +code: + local_id: ultrasound_simulator_gan + url: https://www.dropbox.com/s/089l4ixd2k7fiyy/ultrasound_simulator_gan_code.tar.gz?dl=1 + action: expand + destination: extensions diff --git a/ultrasound_simulator_gan_model_zoo_data.yml b/ultrasound_simulator_gan_model_zoo_data.yml new file mode 100644 index 0000000..e8ccb8b --- /dev/null +++ b/ultrasound_simulator_gan_model_zoo_data.yml @@ -0,0 +1,8 @@ +--- +config: + version: 1.0 +data: + local_id: ultrasound_simulator_gan + url: https://www.dropbox.com/s/hu1i8yjdptwq6wj/ultrasound_simulator_gan_model_zoo_data.tar.gz?dl=1 + action: expand + destination: data diff --git a/ultrasound_simulator_gan_model_zoo_weights.yml b/ultrasound_simulator_gan_model_zoo_weights.yml new file mode 100644 index 0000000..31f0ffb --- /dev/null +++ b/ultrasound_simulator_gan_model_zoo_weights.yml @@ -0,0 +1,8 @@ +--- +config: + version: 1.0 +weights: + local_id: ultrasound_simulator_gan + url: https://www.dropbox.com/s/95smm4i464nwczm/ultrasound_simulator_gan_weights.tar.gz?dl=1 + action: expand + destination: models diff --git a/unet.yml b/unet.yml new file mode 100644 index 0000000..ae47a96 --- /dev/null +++ b/unet.yml @@ -0,0 +1,7 @@ +--- +config: + version: 1.0 +download: + url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/unet.tar.gz + action: expand + destination: examples diff --git a/vnet.yml b/vnet.yml new file mode 100644 index 0000000..0833ad0 --- /dev/null +++ b/vnet.yml @@ -0,0 +1,7 @@ +--- +config: + version: 1.0 +download: + url: http://cmic.cs.ucl.ac.uk/platform/niftynetexamples/vnet.tar.gz + action: expand + destination: examples