Switch conda environments to using apptainer / singularity containers

[Thomieh73]

The packages I need to have are:

• Nanoplot
• Nanofilt
• Fly
• filtlong

[Thomieh73]

container locations

• Nanoplot container is here: https://biocontainers.pro/tools/nanoplot
• filtlong docker image: https://quay.io/repository/biocontainers/filtlong
• Nanofilt docker image: https://quay.io/repository/biocontainers/nanofilt
• Flye singularityimage: https://biocontainers.pro/tools/flye

[Thomieh73]

I can use apptainer to build images of the tools that I want.
See here for instructions: https://apptainer.org/docs/user/main/build_a_container.html

[Thomieh73]

Apptainer can also use docker images.: https://apptainer.org/docs/user/main/docker_and_oci.html#containers-from-docker-hub