develop: replacing `mets::phreg.par` with `mets::phreg_weibull` #12

	# runs r cmd check + unit tests in inst/tinytest
	on:
	pull_request:
	branches: [main, dev]

	name: check package

	jobs:
	r-cmd-check:
	runs-on: ${{ matrix.config.os }}

	name: ${{ matrix.config.os }} (${{ matrix.config.r }})

	strategy:
	fail-fast: false
	matrix:
	config:
	- {os: ubuntu-latest, r: 'release'}

	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
	R_KEEP_PKG_SOURCE: yes

	steps:
	- uses: actions/checkout@v4
	- uses: r-lib/actions/setup-pandoc@v2
	- uses: r-lib/actions/setup-tinytex@v2
	- uses: r-lib/actions/setup-r@v2
	with:
	r-version: ${{ matrix.config.r }}
	http-user-agent: ${{ matrix.config.http-user-agent }}
	use-public-rspm: true

	- name: Install libpoppler-cpp-dev # required to install pdftools (R pkg)
	run: sudo apt-get install libpoppler-cpp-dev

	- uses: r-lib/actions/setup-r-dependencies@v2
	with:
	extra-packages: \|
	any::lintr
	any::devtools
	any::rcmdcheck
	needs: check, lint

	- uses: r-lib/actions/check-r-package@v2
	with:
	upload-snapshots: true
	args: 'c("--ignore-vignettes")'
	build_args: 'c("--no-build-vignettes")'

	# test that committed man pages and namespace are up to date
	- name: build roxygen documentation
	run: \|
	cp -r man .man
	cp -r NAMESPACE .NAMESPACE
	make roxygen

	- name: Check man pages
	run: diff -r man .man

	- name: Check NAMESPACE
	run: diff -r NAMESPACE .NAMESPACE

	- name: Lint package
	run: lintr::lint_package()
	shell: Rscript {0}
	env:
	LINTR_ERROR_ON_LINT: true

	# test examples that have not been tested with r cmd check because of
	# \donttest
	- name: check examples
	run: make check-examples

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