fix: missleading errors (#14)

Author: akselthomsen

.github/linters/.cspell-wordlist.json

@@ -7,8 +7,10 @@
     "README.md",
     ".gitignore",
     ".Rbuildignore",
+    ".mega-linter.yml",
     ".cspell.json",
     ".lintr",
+    ".lycheeignore",
     "inst/WORDLIST",
     "docs/**"
     ],

.github/linters/.cspell.json

@@ -7,9 +7,13 @@
     "README.md",
     ".gitignore",
     ".Rbuildignore",
+    ".mega-linter.yml",
     ".cspell.json",
-    ".lintr"
-  ],
+    ".lintr",
+    ".lycheeignore",
+    "inst/WORDLIST",
+    "docs/**"
+    ],
   "patterns": [
     {
       "name": "code_chunk",

.github/linters/.mega-linter.yml

@@ -1,10 +1,10 @@
 APPLY_FIXES: all
-APPLY_FIXES_EVENT: pull_request
-APPLY_FIXES_MODE: pull_request
 DISABLE_LINTERS:
   - REPOSITORY_GIT_DIFF
 ADDITIONAL_EXCLUDED_DIRECTORIES:
   - dev
-SPELL_LYCHEE_FILE_EXTENSIONS: "*"
+SPELL_LYCHEE_ARGUMENTS: "--exclude-path man/figures --exclude-path docs"
+SPELL_LYCHEE_FILE_EXTENSIONS: 
+  - "*"
 SPELL_CSPELL_ANALYZE_FILE_NAMES: false
-MARKDOWN_MARKDOWNLINT_ARGUMENTS: "--ignore tests/testthat/_snaps"
+MARKDOWN_MARKDOWNLINT_ARGUMENTS: "--ignore tests/testthat/_snaps --ignore LICENSE.md --ignore NEWS.md --ignore README.md --ignore cran-comments.md"

.github/workflows/megalinter.yaml

@@ -23,7 +23,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Set up node.js 20
-        uses: actions/setup-node@v3
+        uses: actions/setup-node@v4
         with:
           node-version: "20"
       - name: Checkout
@@ -41,9 +41,12 @@ jobs:
           fi
       - name: MegaLinter
         id: ml
-        uses: oxsecurity/megalinter@v7
+        uses: oxsecurity/megalinter@latest
         env:
           VALIDATE_ALL_CODEBASE: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }}
+          APPLY_FIXES: all
+          APPLY_FIXES_EVENT: pull_request
+          APPLY_FIXES_MODE: pull_request
       - name: Archive production artifacts
         if: success() || failure()
         uses: actions/upload-artifact@v4

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: r.workflows
 Title: R package workflows
-Version: 0.0.1
+Version: 0.0.1.9000
 Authors@R: c(
     person("Cervan", "Girard", , "cgid@novonordisk.com", role = c("aut", "cre")),
     person("Aksel", "Thomsen", , "oath@novonordisk.com", role = c("aut"))