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<html>
<title>BOSC2002 Program</title>
<style type="text/css"><!--
h1 { color: #336; font-style: normal; font-weight: bolder; font-family: Arial, Helvetica }
h2 { color: #336; font-style: normal; font-weight: bolder; font-family: Arial, Helvetica }
h3 { color: #336; font-style: normal; font-weight: bolder; font-family: Arial, Helvetica }-->
</style>
<body bgcolor="white">
<table border="0" cellpadding="2" cellspacing="2">
<tr>
<td colspan="2" align="left" valign="top">
<a href="index.html"><img src="bosc2002.png" alt="BOSC 2001" width="196" height="196" hspace="10"></a></td>
<td valign="center" hspace=20>
<img src="title.gif" alt="Bioinformatics Open Source Conference" width="394" height="53">
<p>
<font face="Arial,Helvetica,Geneva,Swiss,SunSans-Regular">
<font size=+5><B>Program</B></font><br>
View <a href="talks.html">the talk abstracts</a><P>
</font>
</tr>
</table>
<center>
<table border="1" cellpadding="2" cellspacing="2" bgcolor=#BBFF88>
<tr bgcolor=#FFFF99><th colspan=3><a name="day1">Day 1 (August 1, 2002)</a></th></tr>
<tr><th>Time</th><th>Title</th><th>Speaker</th></tr>
<tr><td align=right> 8:00 - 9:00</td><td
colspan="2"> Registration
in lobby of Westin Hotel (see <a href="http://www.ismb02.org">ISMB02</a>)</td></tr>
<tr><td align=right> 9:00 - 9:15</td><td>Introduction and welcome</td><td>Jason Stajich</td></tr>
<tr><td align=right> 9:15 - 10:15</td><td><a
href="talks.html#birney">Are we growing up? Reports from the Open
Bioinformatics Foundation</a> </td><td>Ewan Birney</td></tr>
<tr><td align=right>10:15 - 10:40</td><td><a href="talks.html#bioperl">Bioperl project report</a></td><td>Jason Stajich</td></tr>
<tr><td align=right>10:40 - 11:00</td><td colspan="2"> Coffee break</td></tr>
<tr><td align=right>11:00 - 11:25</td><td><a href="talks.html#bioperl-pipeline">Bioperl-Pipeline System</a></td><td>Shawn Hoon</td></tr>
<tr><td align=right>11:25 - 11:35</td><td><a href="talks.html#cabio">caBIO: An open-source, object oriented API for biomedical informatics</a></td><td>Peter Covitz</td></tr>
<tr><td align=right>11:35 - 12:00</td><td><a href="talks.html#biopython">Biopython and the Laboratory Scientist</a></td><td>Brad Chapman</td></tr>
<tr><td align=right>12:00 - 1:45</td><td colspan="2"> Lunch and poster set up</td></tr>
<tr><td align=right> 1:50 - 2:15</td><td><a href="talks.html#contract">The Open Source Authors' Contract</a></td><td>Steven Brenner</td></tr>
<tr><td align=right> 2:15 - 2:40</td><td><a href="talks.html#biojava">BioJava Toolkit Progress</a></td><td>Matthew Pocock</td></tr>
<tr><td align=right> 2:40 - 2:50</td><td><a href="talks.html#goet">GOET: the General Ontology Editing Tool</a></td><td>John Richter</td></tr>
<tr><td align=right> 2:50 - 3:00</td><td><a href="talks.html#hmm">GHMM & HMMed: A comprehensive HMM toolkit</a></td><td>Alexander Schliep</td></tr>
<tr><td align=right> 3:00 - 3:10</td><td><a href="talks.html#usability">Usability</a></td><td>Andrew Dalke</td></tr>
<tr><td align=right> 3:10 - 4:00</td><td colspan="2"> Poster session and coffee break</td></tr>
<tr><td align=right> 4:00 - 5:00</td><td><a
href="talks.html#eisen">Creating an Electronic Public Library
of Scientific Knowledge</a></td><td>Michael Eisen</td></tr>
<tr><td align=right> 5:00 - 7:00</td><td colspan="2"> Dinner (on your own)</td></tr>
<tr><td colspan="3"><center>BoFs</center></td></tr>
<tr><td align=right> 7:00 - 8:00</td><td colspan="2">Bioperl (Turner Valley)<br>
Biopython (Leduc)</td></tr>
<tr><td align=right> 8:00 - 9:00</td><td colspan="2">BioJava (Turner Valley)<br>
Structure (Leduc)<br>
Bioperl-analysis (Lobby)
</td></tr>
<tr><td align=right> 9:00 - 10:00</td><td colspan="2">O|B|F Board meeting (Turner Valley)<br>
Fuzzy systems (Leduc)
</td></tr>
</table>
<P>
<table border="1" cellpadding="2" cellspacing="2" bgcolor=#BFAAFF>
<tr bgcolor=#FFFF99><th colspan=3><a name="day2">Day 2 (August 2, 2002)</a></th></tr>
<tr><th>Time</th><th>Title</th><th>Speaker</th></tr>
<tr><td align=right> 9:00 - 10:00</td><td><a
href="talks.html#hide">Genomics, Infectious Disease and Developing Worlds</a></td><td>Winston Hide</td></tr>
<tr><td align=right>10:00 - 10:25</td><td><a href="talks.html#omnigene">OmniGene</a></td><td>Brian Gilman</td></tr>
<tr><td align=right>10:25 - 10:45</td><td colspan="2"> Coffee break</td></tr>
<tr><td align=right>10:45 - 11:10</td><td><a href="talks.html#browsing">Generic Genome Browser & Apollo</a></td><td>Lincoln Stein & Nomi Harris</td></tr>
<tr><td align=right>11:10 - 11:35</td><td><a href="talks.html#biomoby">BioMOBY</a></td><td>Mark Wilkinson</td></tr>
<tr><td align=right>11:35 - 12:00</td><td><a href="talks.html#biosql">BioSQL</a></td><td>Chris Mungall</td></tr>
<tr><td align=right>12:00 - 1:45</td><td colspan="1"> Lunch and after-lunch speaker<br>
<a href="talks.html#kilburn">Post-Genomic Challenges for the Bioinformatics Open Source Community</a></td><td>Dan Kilburn</td></tr>
<!-- Canceled
<tr><td align=right> 1:50 - 2:15</td><td><a href="talks.html#cartwheel">Cartwheel and FamilyJewels: Bioinformatics Toolkits for Genomic Analysis</a></td><td>Titus Brown</td></tr>
-->
<tr><td align=right> 1:50 - 2:15</td><td><a href="talks.html#magestk">MAGEstk - the MAGE software toolkit</a></td><td>Jason Stewart</td></tr>
<tr><td align=right> 2:15 - 3:00</td><td colspan="2">Lightning talks</td></tr>
<tr><td align=right> </td><td><a href="talks.html#freebsd">The FreeBSD-bio porting project</a></td><td>Johann Visagie</td></tr>
<tr><td align=right> </td><td><a href="talks.html#vocabulary">A controlled vocabulary for gene expression</a></td><td>Johann Visagie</td></tr>
<tr><td align=right> </td><td><a href="talks.html#lumberjack">LumberJack</a></td><td>Carolyn Lawrence</td></tr>
<tr><td align=right> </td><td><a href="talks.html#clustering">Analyzing cDNA microarray data using Python and the C clustering library</a></td><td>Michiel de Hoon</td></tr>
<tr><td align=right> </td><td><a href="talks.html#depend">Schedule::Depend</a></td><td>Steven Lembark</td></tr>
<tr><td align=right> </td><td><a href="talks.html#biit">Biological Information Integration Toolkit</a></td><td>Jeremy Praissman</td></tr>
<tr><td align=right> 3:00 - 3:20</td><td colspan="2"> Coffee break</td></tr>
<tr><td align=right> 3:20 - end</td><td colspan="2">Lightning talks</td></tr>
<tr><td align=right> </td><td><a href="talks.html#nblast">NBLAST: a cluster variant of BLAST for NxN comparisons</a></td><td>Michel Dumontier</td></tr>
<tr><td align=right> </td><td><a href="talks.html#indexing">OBF Simple Flat-file indexing</a></td><td>Andrew Dalke</td></tr>
<tr><td align=right> </td><td><a href="talks.html#bqs">Bibliographic Query Service in bioperl</a></td><td>Martin Senger</td></tr>
<tr><td align=right> </td><td><a href="talks.html#mda">Proposed OMG/LSR Effort for Modeling Domain Objects</a></td><td>Scott Markel</td></tr>
<tr><td align=right> </td><td><a href="talks.html#mygrid">myGrid--personalised biological services on the Grid</a></td><td>Phillip Lord</td></tr>
<tr><td align=right> </td><td><a href="talks.html#structure">Bio::Structure</a></td><td>Kris Boulez</td></tr>
<tr><td align=right> </td><td><a href="talks.html#eponine">Eponine: machine learning about your favourite sequences</a></td><td>Thomas Down</td></tr>
<tr><td align=right> </td><td><a href="talks.html#gfd">The Generic Feature Database</a></td><td>Shawn Hoon</td></tr>
<tr><td align=right> </td><td><a href="talks.html#emboss">EMBOSS</a></td><td>Jon Ison</td></tr>
<!-- template
<tr><td align=right> </td><td><a href="talks.html#"></a></td><td></td></tr>
-->
<tr><td align=right> </td><td colspan="2">Slots available -- send abstracts to <a href="mailto:bosc@open-bio.org">bosc@open-bio.org</a></td</tr>
<tr><td colspan="3"><center>BoFs (starting 15 minutes after talks end)</center></td></tr>
<tr><td align=left>15 min. after<br>
talks end<br></td><td colspan="2">gmod (Main room)<br>
biosql (Main room)
</td></tr>
</table>
</center>
<P><HR><P>
<a href=index.html>Back to BOSC2002 home page</a>
</body></html>