|
7 | 7 | "CMEOALT" |
8 | 8 | ], |
9 | 9 | "changed": true, |
10 | | - "date": "2026-02-26T19:25:09.049222", |
| 10 | + "date": "2026-03-13T14:37:35.514501", |
11 | 11 | "metrics": { |
12 | 12 | "Axioms: Breakdown of axiom types": { |
13 | 13 | "AnnotationAssertion": 3203, |
|
166 | 166 | "IDPOALT" |
167 | 167 | ], |
168 | 168 | "changed": true, |
169 | | - "date": "2026-02-26T19:25:15.739533", |
| 169 | + "date": "2026-03-13T14:37:42.824345", |
170 | 170 | "metrics": { |
171 | 171 | "Axioms: Breakdown of axiom types": { |
172 | 172 | "AnnotationAssertion": 981, |
|
313 | 313 | "PREFERALT" |
314 | 314 | ], |
315 | 315 | "changed": true, |
316 | | - "date": "2026-02-26T19:25:22.544020", |
| 316 | + "date": "2026-03-13T14:37:49.831629", |
317 | 317 | "metrics": { |
318 | 318 | "Axioms: Breakdown of axiom types": { |
319 | 319 | "AnnotationAssertion": 1245, |
|
458 | 458 | { |
459 | 459 | "base_generated": true, |
460 | 460 | "base_prefixes": [ |
461 | | - "VARIO", |
462 | | - "VARIOALT", |
463 | | - "VariO" |
| 461 | + "VVO", |
| 462 | + "VVOALT" |
464 | 463 | ], |
465 | 464 | "changed": true, |
466 | | - "date": "2026-02-26T19:25:27.489858", |
| 465 | + "date": "2026-03-13T14:37:55.635142", |
467 | 466 | "metrics": { |
468 | 467 | "Axioms: Breakdown of axiom types": { |
469 | | - "AnnotationAssertion": 16368, |
470 | | - "Declaration": 7373, |
471 | | - "DifferentIndividuals": 1, |
472 | | - "SubClassOf": 8077 |
473 | | - }, |
474 | | - "Axioms: Number of axioms": 31819, |
475 | | - "Entities: % of entities reused": 96.68, |
476 | | - "Entities: Number of annotation properties": 11, |
477 | | - "Entities: Number of classes": 7362, |
478 | | - "Entities: Number of data properties": 0, |
479 | | - "Entities: Number of individuals": 0, |
480 | | - "Entities: Number of object properties": 1, |
| 468 | + "AnnotationAssertion": 49255, |
| 469 | + "AnnotationPropertyRangeOf": 1, |
| 470 | + "ClassAssertion": 20, |
| 471 | + "DataPropertyDomain": 4, |
| 472 | + "DataPropertyRange": 4, |
| 473 | + "Declaration": 3745, |
| 474 | + "DifferentIndividuals": 2, |
| 475 | + "DisjointClasses": 1028, |
| 476 | + "EquivalentClasses": 13, |
| 477 | + "EquivalentObjectProperties": 3, |
| 478 | + "FunctionalDataProperty": 4, |
| 479 | + "FunctionalObjectProperty": 4, |
| 480 | + "InverseFunctionalObjectProperty": 1, |
| 481 | + "InverseObjectProperties": 18, |
| 482 | + "IrrefexiveObjectProperty": 1, |
| 483 | + "ObjectPropertyDomain": 24, |
| 484 | + "ObjectPropertyRange": 24, |
| 485 | + "Rule": 4, |
| 486 | + "SubAnnotationPropertyOf": 7, |
| 487 | + "SubClassOf": 3683, |
| 488 | + "SubObjectPropertyOf": 26, |
| 489 | + "SubPropertyChainOf": 2, |
| 490 | + "TransitiveObjectProperty": 4 |
| 491 | + }, |
| 492 | + "Axioms: Number of axioms": 57877, |
| 493 | + "Entities: % of entities reused": 100.0, |
| 494 | + "Entities: Number of annotation properties": 74, |
| 495 | + "Entities: Number of classes": 3597, |
| 496 | + "Entities: Number of data properties": 4, |
| 497 | + "Entities: Number of individuals": 20, |
| 498 | + "Entities: Number of object properties": 53, |
481 | 499 | "Entities: Number of unsatisfiable classes": 0, |
482 | 500 | "Info: Breakdown of OWL class expressions used": { |
483 | | - "Class": 23516, |
484 | | - "ObjectSomeValuesFrom": 4 |
| 501 | + "Class": 14435, |
| 502 | + "DataExactCardinality": 6, |
| 503 | + "DataMinCardinality": 1, |
| 504 | + "ObjectAllValuesFrom": 6, |
| 505 | + "ObjectComplementOf": 3, |
| 506 | + "ObjectExactCardinality": 1, |
| 507 | + "ObjectIntersectionOf": 21, |
| 508 | + "ObjectMinCardinality": 1, |
| 509 | + "ObjectOneOf": 3, |
| 510 | + "ObjectSomeValuesFrom": 90, |
| 511 | + "ObjectUnionOf": 2 |
485 | 512 | }, |
486 | | - "Info: Does the ontology fall under OWL 2 DL?": false, |
| 513 | + "Info: Does the ontology fall under OWL 2 DL?": true, |
487 | 514 | "Info: Experimental OBO score": { |
488 | | - "_dashboard": 0.444, |
| 515 | + "_dashboard": 0.66, |
489 | 516 | "_formula": "(1*impact+1*dashboard)/2", |
490 | 517 | "_impact": 0.0, |
491 | 518 | "_impact_external": 0, |
492 | | - "_reuse": 0.967, |
493 | | - "oboscore": 0.222 |
| 519 | + "_reuse": 1.0, |
| 520 | + "oboscore": 0.33 |
494 | 521 | }, |
495 | 522 | "Info: How many externally documented uses?": 0, |
496 | 523 | "Info: How many ontologies use it?": 0, |
497 | 524 | "Info: Logical consistency": true, |
498 | | - "Info: Syntax": "OWL/XML Syntax", |
| 525 | + "Info: Syntax": "RDF/XML Syntax", |
499 | 526 | "Info: Usage of namespaces in axioms": { |
500 | | - "AEO": 2, |
501 | | - "AISM": 3, |
502 | | - "APO": 26, |
503 | | - "APOLLO_SV": 38, |
504 | | - "BSPO": 8, |
505 | | - "BTO": 179, |
506 | | - "CEPH": 2, |
507 | | - "CHEBI": 106, |
508 | | - "CHMO": 2, |
509 | | - "CL": 530, |
510 | | - "CLAO": 9, |
511 | | - "CLO": 2, |
512 | | - "CLYH": 2, |
513 | | - "CMO": 7, |
514 | | - "CTENO": 4, |
515 | | - "CVDO": 2, |
516 | | - "ECAO": 2, |
517 | | - "ECOCORE": 157, |
518 | | - "ENVO": 68, |
519 | | - "ExO": 8, |
520 | | - "FAO": 43, |
521 | | - "FBbt": 6, |
522 | | - "FBcv": 12, |
523 | | - "FMA": 21, |
524 | | - "FOODON": 2, |
525 | | - "FYPO": 6, |
526 | | - "GECKO": 2, |
527 | | - "GENO": 16, |
528 | | - "GO": 371, |
529 | | - "GSSO": 170, |
530 | | - "HOM": 15, |
531 | | - "HP": 15, |
532 | | - "IAO": 7788, |
533 | | - "IDO": 16, |
534 | | - "MF": 5, |
535 | | - "MFOEM": 5, |
536 | | - "MI": 5, |
537 | | - "MONDO": 10, |
538 | | - "MP": 15, |
539 | | - "MPATH": 14, |
540 | | - "MS": 5, |
541 | | - "NBO": 63, |
542 | | - "NCIT": 958, |
543 | | - "OBA": 4, |
544 | | - "OHMI": 3, |
545 | | - "OMP": 48, |
546 | | - "PATO": 2, |
547 | | - "PCO": 11, |
548 | | - "PLANA": 10, |
549 | | - "PO": 87, |
550 | | - "PORO": 4, |
551 | | - "PROCO": 7, |
552 | | - "PW": 4, |
553 | | - "RBO": 19, |
554 | | - "REX": 11, |
555 | | - "SCDO": 6, |
556 | | - "SO": 10, |
557 | | - "SPD": 2, |
558 | | - "STATO": 3, |
559 | | - "SYMP": 2, |
560 | | - "TGMA": 2, |
561 | | - "TO": 5, |
562 | | - "TRANS": 9, |
563 | | - "TXPO": 7, |
564 | | - "UBERON": 132, |
565 | | - "UO": 2, |
566 | | - "VARIOALT": 5, |
567 | | - "VariO": 811, |
568 | | - "WBPhenotype": 5, |
569 | | - "WBbt": 6, |
570 | | - "XAO": 2, |
571 | | - "ZFA": 2, |
572 | | - "obo": 19245, |
573 | | - "oboInOwl": 686, |
574 | | - "prefix_unknown": 123, |
575 | | - "rdf": 173, |
576 | | - "rdfs": 7396, |
577 | | - "skos": 681 |
| 527 | + "APOLLO_SV": 22, |
| 528 | + "BFO": 355, |
| 529 | + "IAO": 43125, |
| 530 | + "OBI": 74, |
| 531 | + "OMO": 6, |
| 532 | + "PATO": 16, |
| 533 | + "RO": 122, |
| 534 | + "UO": 10, |
| 535 | + "dc": 2, |
| 536 | + "dc11": 29, |
| 537 | + "foaf": 4, |
| 538 | + "obo": 13320, |
| 539 | + "oboInOwl": 3362, |
| 540 | + "owl": 29, |
| 541 | + "prefix_unknown": 1, |
| 542 | + "rdf": 8, |
| 543 | + "rdfs": 3843, |
| 544 | + "xsd": 4 |
578 | 545 | }, |
579 | 546 | "Info: Which ontologies use it?": [] |
580 | 547 | }, |
581 | | - "mirror_from": "https://variationontology.org/UberVariO/UberVariO100.xml", |
582 | | - "namespace": "vario", |
| 548 | + "mirror_from": "https://raw.githubusercontent.com/edithlaszny/vvo/main/vvo.owl", |
| 549 | + "namespace": "vvo", |
583 | 550 | "results": { |
584 | 551 | "FP01 Open": { |
585 | | - "comment": "Missing ontology license.", |
| 552 | + "comment": "License should use property 'http://purl.org/dc/terms/license'. Ontology license 'this ontology is distributed under an attribution 4.0 international (cc by 4.0). the license is: https://creativecommons.org/licenses/by/4.0/. copyright: dr edit hlaszny (2026-)' does not match registry license 'https://creativecommons.org/licenses/by/4.0/'.", |
586 | 553 | "status": "ERROR" |
587 | 554 | }, |
588 | 555 | "FP02 Common Format": { |
589 | | - "comment": "OWL syntax (OWL/XML Syntax), but should be RDF/XML", |
590 | | - "status": "WARN" |
| 556 | + "status": "PASS" |
591 | 557 | }, |
592 | 558 | "FP03 URIs": { |
593 | | - "comment": "0 invalid IRIs. The Ontology IRI is not valid.", |
594 | | - "file": "fp3", |
595 | | - "status": "ERROR" |
| 559 | + "status": "PASS" |
596 | 560 | }, |
597 | 561 | "FP04 Versioning": { |
598 | | - "comment": "Missing version IRI", |
| 562 | + "comment": "Version IRI does not resolve", |
599 | 563 | "status": "ERROR" |
600 | 564 | }, |
601 | 565 | "FP05 Scope": { |
|
618 | 582 | "status": "PASS" |
619 | 583 | }, |
620 | 584 | "FP12 Naming Conventions": { |
621 | | - "comment": "10 multiple labels. See ROBOT Report for details.", |
622 | | - "status": "ERROR" |
| 585 | + "status": "PASS" |
623 | 586 | }, |
624 | 587 | "FP16 Maintenance": { |
625 | | - "comment": "Missing version IRI to check date", |
626 | | - "status": "ERROR" |
| 588 | + "comment": "Version IRI does not have date information", |
| 589 | + "status": "INFO" |
627 | 590 | }, |
628 | 591 | "FP20 Responsiveness": { |
629 | 592 | "status": "PASS" |
630 | 593 | }, |
631 | 594 | "ROBOT Report": { |
632 | | - "comment": "10 errors, 0 warnings, 0 info messages.", |
| 595 | + "comment": "1 errors, 0 warnings, 0 info messages.", |
633 | 596 | "file": "robot_report", |
634 | 597 | "results": { |
635 | | - "ERROR": 10, |
| 598 | + "ERROR": 1, |
636 | 599 | "INFO": 0, |
637 | 600 | "WARN": 0 |
638 | 601 | }, |
639 | 602 | "status": "ERROR" |
640 | 603 | } |
641 | 604 | }, |
642 | | - "sha256_hash": "7c87e8847c914983d70caea1ccf22bd048f5a226f90527c31f1ebd84fc8f263e", |
| 605 | + "sha256_hash": "d468afc2c9b01e64b4205d20b0d9e9e0d604d07b61d67d265059484b56dd6956", |
643 | 606 | "summary": { |
644 | | - "comment": "7 errors", |
| 607 | + "comment": "4 errors", |
645 | 608 | "status": "ERROR", |
646 | 609 | "summary_count": { |
647 | | - "ERROR": 7, |
648 | | - "INFO": 0, |
649 | | - "WARN": 1 |
| 610 | + "ERROR": 4, |
| 611 | + "INFO": 1, |
| 612 | + "WARN": 0 |
650 | 613 | } |
651 | 614 | }, |
652 | | - "version": null |
| 615 | + "version": "http://purl.obolibrary.org/obo/vvo/1-001/vvo.owl" |
653 | 616 | } |
654 | 617 | ], |
655 | 618 | "oboscore": { |
|
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