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Update dashboard run (#160)
Co-authored-by: pfabry <[email protected]>
1 parent 7d04ac0 commit c49830e

13 files changed

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-176
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‎dashboard/analysis.html

+32-32
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‎dashboard/dashboard-results.json

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@@ -7,7 +7,7 @@
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"MODALALT"
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"changed": true,
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"date": "2025-02-17T13:21:51.588189",
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"date": "2025-02-18T14:32:21.656225",
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"metrics": {
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@@ -120,7 +120,7 @@
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"PBPKOALT"
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],
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"changed": true,
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"date": "2025-02-17T13:21:59.031529",
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"date": "2025-02-18T14:34:00.113043",
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"metrics": {
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"Axioms: Breakdown of axiom types": {
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"AnnotationAssertion": 2939,
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"PRIDE_CVALT"
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],
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"changed": true,
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"date": "2025-02-17T13:22:04.023025",
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"date": "2025-02-18T14:34:53.580166",
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@@ -261,42 +261,42 @@
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"Entities: % of entities reused": 100.0,
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"Entities: Number of individuals": 19,
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"Entities: Number of object properties": 111,
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"Entities: Number of object properties": 108,
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"Entities: Number of unsatisfiable classes": 0,
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"Info: Breakdown of OWL class expressions used": {
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"Class": 338802,
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"Class": 338815,
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"ObjectSomeValuesFrom": 59038,
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"ObjectSomeValuesFrom": 59005,
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},
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"Info: Does the ontology fall under OWL 2 DL?": true,
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"Info: Experimental OBO score": {
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"_dashboard": 0.66,
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"_dashboard": 0.667,
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"_formula": "(1*impact+1*dashboard)/2",
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"_impact": 0.0,
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"_impact_external": 0,
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"_reuse": 1.0,
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"oboscore": 0.33
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"oboscore": 0.334
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},
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"Info: How many externally documented uses?": 0,
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"Info: How many ontologies use it?": 0,
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"Info: Logical consistency": true,
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"Info: Syntax": "RDF/XML Syntax",
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"Info: Usage of namespaces in axioms": {
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"BFO": 19762,
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"BFO": 19774,
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"BTO": 460,
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"CHEBI": 20692,
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"CHMO": 9614,
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"FIX": 81,
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"FMA": 24,
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"GO": 3227,
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"GO": 3226,
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"IAO": 85039,
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"IAO": 85073,
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"MA": 10,
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"MONDO": 53838,
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"PO": 707,
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"PR": 19717,
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"REX": 1,
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"SO": 6,
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"TO": 5,
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"ZEA": 2,
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"ZFA": 72,
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"dc": 12657,
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"dc11": 1656,
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"dc11": 1657,
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"foaf": 659,
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"obo": 19382,
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"owl": 14068,
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"rdf": 295890,
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"rdfs": 82110,
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"obo": 19347,
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"owl": 14059,
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"rdf": 296696,
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"rdfs": 82168,
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"skos": 74463,
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"xsd": 621
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"xsd": 3
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},
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"Info: Which ontologies use it?": []
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},
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"mirror_from": "https://raw.githubusercontent.com/PRIDE-Archive/pride-ontology/master/pride_cv.owl",
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"namespace": "pride_cv",
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"results": {
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"FP01 Open": {
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"comment": "Missing ontology license.",
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"comment": "Ontology license 'https://creativecommons.org/licenses/by/4.0/' does not match registry license 'https://creativecommons.org/publicdomain/zero/1.0/'.",
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"status": "ERROR"
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},
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"FP02 Common Format": {
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"status": "PASS"
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},
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"FP16 Maintenance": {
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"comment": "Version IRI does not have date information",
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"status": "INFO"
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"status": "PASS"
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},
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"FP20 Responsiveness": {
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"status": "PASS"
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"status": "PASS"
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}
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},
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"sha256_hash": "114f1583ab8ec68cb253807b1fd59072f601fd1a4a96ec661becb7bbdaf8f88f",
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"sha256_hash": "6a725477b70e981b44d2fcc56e8a7791c4680361b6b2ce8f50195fa9e94cd7ce",
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"summary": {
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"comment": "4 errors",
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"status": "ERROR",
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"summary_count": {
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"ERROR": 4,
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"INFO": 1,
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"INFO": 0,
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"WARN": 0
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}
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},
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"version": "http://purl.obolibrary.org/obo/pride/2.1.12/pride.owl"
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"version": "http://purl.obolibrary.org/obo/pride/releases/2025-02-17/pride.owl"
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},
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{
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"base_generated": true,
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"TMPALT"
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],
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"changed": true,
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"date": "2025-02-17T13:21:47.112391",
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"date": "2025-02-18T14:32:17.400660",
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"metrics": {
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"Axioms: Breakdown of axiom types": {
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"AnnotationAssertion": 2,

‎dashboard/dashboard-results.yml

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@@ -29,7 +29,7 @@ ontologies:
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- MODAL
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- MODALALT
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changed: true
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date: 2025-02-17 13:21:51.588189
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date: 2025-02-18 14:32:21.656225
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metrics:
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'Axioms: Breakdown of axiom types':
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AnnotationAssertion: 50
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- PBPKO
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- PBPKOALT
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changed: true
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date: 2025-02-17 13:21:59.031529
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date: 2025-02-18 14:34:00.113043
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metrics:
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'Axioms: Breakdown of axiom types':
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AnnotationAssertion: 2939
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- PRIDE_CV
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- PRIDE_CVALT
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changed: true
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date: 2025-02-17 13:22:04.023025
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date: 2025-02-18 14:34:53.580166
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metrics:
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'Axioms: Breakdown of axiom types':
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AnnotationAssertion: 738077
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Declaration: 67528
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AnnotationAssertion: 737781
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Declaration: 67517
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DifferentIndividuals: 2
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DisjointClasses: 282
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EquivalentClasses: 5830
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ObjectPropertyDomain: 12
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ObjectPropertyRange: 13
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SubAnnotationPropertyOf: 10
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SubClassOf: 117753
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SubClassOf: 117764
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SubObjectPropertyOf: 37
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SubPropertyChainOf: 12
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SymmetricObjectProperty: 1
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TransitiveObjectProperty: 12
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'Axioms: Number of axioms': 929588
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TransitiveObjectProperty: 10
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'Axioms: Number of axioms': 929290
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'Entities: % of entities reused': 100.0
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'Entities: Number of annotation properties': 174
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'Entities: Number of classes': 67224
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'Entities: Number of annotation properties': 175
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'Entities: Number of classes': 67215
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'Entities: Number of data properties': 3
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'Entities: Number of individuals': 19
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'Entities: Number of object properties': 111
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'Entities: Number of object properties': 108
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'Entities: Number of unsatisfiable classes': 0
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'Info: Breakdown of OWL class expressions used':
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Class: 338802
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Class: 338815
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ObjectAllValuesFrom: 15
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ObjectIntersectionOf: 23662
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ObjectSomeValuesFrom: 59038
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ObjectSomeValuesFrom: 59005
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ObjectUnionOf: 1256
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'Info: Does the ontology fall under OWL 2 DL?': true
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'Info: Experimental OBO score':
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_dashboard: 0.66
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_dashboard: 0.667
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_formula: (1*impact+1*dashboard)/2
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_impact: 0.0
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_impact_external: 0
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_reuse: 1.0
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oboscore: 0.33
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oboscore: 0.334
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'Info: How many externally documented uses?': 0
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'Info: How many ontologies use it?': 0
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'Info: Logical consistency': true
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'Info: Syntax': RDF/XML Syntax
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'Info: Usage of namespaces in axioms':
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BFO: 19762
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BFO: 19774
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BTO: 460
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CHEBI: 20692
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CHMO: 9614
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FBdv: 3
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FIX: 81
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FMA: 24
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GO: 3227
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GO: 3226
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HANCESTRO: 227
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HP: 6866
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IAO: 85039
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IAO: 85073
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IDO: 2
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MA: 10
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MONDO: 53838
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PO: 707
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PR: 19717
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REX: 1
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RO: 33616
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RO: 33632
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SO: 6
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TO: 5
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UBERON: 38588
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UBERON: 38586
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UO: 342
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WBls: 7
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ZEA: 2
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ZFA: 72
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dc: 12657
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dc11: 1656
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dc11: 1657
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foaf: 659
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obo: 19382
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oboInOwl: 750715
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owl: 14068
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prefix_unknown: 136832
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rdf: 295890
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rdfs: 82110
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obo: 19347
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oboInOwl: 750970
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owl: 14059
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prefix_unknown: 136454
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rdf: 296696
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rdfs: 82168
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skos: 74463
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xsd: 621
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xsd: 3
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'Info: Which ontologies use it?': []
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mirror_from: https://raw.githubusercontent.com/PRIDE-Archive/pride-ontology/master/pride_cv.owl
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namespace: pride_cv
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results:
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FP01 Open:
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comment: Missing ontology license.
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comment: Ontology license 'https://creativecommons.org/licenses/by/4.0/' does
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not match registry license 'https://creativecommons.org/publicdomain/zero/1.0/'.
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status: ERROR
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FP02 Common Format:
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status: PASS
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FP12 Naming Conventions:
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status: PASS
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FP16 Maintenance:
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comment: Version IRI does not have date information
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status: INFO
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status: PASS
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FP20 Responsiveness:
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status: PASS
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ROBOT Report:
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status: PASS
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sha256_hash: 114f1583ab8ec68cb253807b1fd59072f601fd1a4a96ec661becb7bbdaf8f88f
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sha256_hash: 6a725477b70e981b44d2fcc56e8a7791c4680361b6b2ce8f50195fa9e94cd7ce
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summary:
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comment: 4 errors
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status: ERROR
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summary_count:
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ERROR: 4
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INFO: 1
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INFO: 0
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WARN: 0
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version: http://purl.obolibrary.org/obo/pride/2.1.12/pride.owl
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version: http://purl.obolibrary.org/obo/pride/releases/2025-02-17/pride.owl
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- base_generated: true
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base_prefixes:
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- TMP
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- TMPALT
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changed: true
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date: 2025-02-17 13:21:47.112391
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date: 2025-02-18 14:32:17.400660
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metrics:
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'Axioms: Breakdown of axiom types':
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AnnotationAssertion: 2

‎dashboard/index.html

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<head>
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<title>OBO Dashboard: New Ontology Requests (2025-02-17)</title>
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<title>OBO Dashboard: New Ontology Requests (2025-02-18)</title>
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<link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.4.1/css/bootstrap.min.css" integrity="sha384-Vkoo8x4CGsO3+Hhxv8T/Q5PaXtkKtu6ug5TOeNV6gBiFeWPGFN9MuhOf23Q9Ifjh" crossorigin="anonymous">
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<style>
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body {
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</script>
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</head>
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<body>
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<h1>OBO Dashboard: New Ontology Requests (2025-02-17)</h1>
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<h1>OBO Dashboard: New Ontology Requests (2025-02-18)</h1>
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<h4>Dashboard for checking new ontology requests to the OBO Foundry. Under construction. <a href="about.html">Learn More!</a></h4>
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<p>Created with <a href="http://robot.obolibrary.org/">ROBOT version 1.9.7</a> and <a href="https://github.com/OBOFoundry/OBO-Dashboard/commit/fae181949e56485fd44c77ae98050c4fa993dd6f">OBO Metadata Schema</a>.</p>
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<p>A very basic analysis of the results can be found <a href="analysis.html">here</a>.</p>
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<td class="check table-danger"><img src="assets/x.svg" height="15px" data-toggle="tooltip" data-html="true" data-placement="right" title="Missing ontology license."></td>
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<td class="check table-danger"><img src="assets/x.svg" height="15px" data-toggle="tooltip" data-html="true" data-placement="right" title="Ontology license 'https://creativecommons.org/licenses/by/4.0/' does not match registry license 'https://creativecommons.org/publicdomain/zero/1.0/'."></td>
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<td class="check table-info"><img src="assets/info.svg" height="15px" data-toggle="tooltip" data-html="true" data-placement="right" title="Version IRI does not have date information"></td>
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<td class="check table-success"><img src="assets/check.svg" height="15px"></td>
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