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./tagseq_clipper.pl fq.fastq | fastx_clipper -a AAAAAAAA -l 20 -Q33 | fastx_clipper -a AGATCGGAAG -l 20 -Q33 | fastq_quality_filter -Q33 -q 20 -p 90 >fq.fastq.trim
./tagseq_clipper.pl A_1.fastq | fastx_clipper -a AAAAAAAA -l 20 -Q33 | fastx_clipper -a AGATCGGAAG -l 20 -Q33 | fastq_quality_filter -Q33 -q 20 -p 90 >A_1.fastq.trim
./tagseq_clipper.pl A_3.fastq | fastx_clipper -a AAAAAAAA -l 20 -Q33 | fastx_clipper -a AGATCGGAAG -l 20 -Q33 | fastq_quality_filter -Q33 -q 20 -p 90 >A_3.fastq.trim
./tagseq_clipper.pl A_4.fastq | fastx_clipper -a AAAAAAAA -l 20 -Q33 | fastx_clipper -a AGATCGGAAG -l 20 -Q33 | fastq_quality_filter -Q33 -q 20 -p 90 >A_4.fastq.trim
./tagseq_clipper.pl A_2.fastq | fastx_clipper -a AAAAAAAA -l 20 -Q33 | fastx_clipper -a AGATCGGAAG -l 20 -Q33 | fastq_quality_filter -Q33 -q 20 -p 90 >A_2.fastq.trim