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Rename modules
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‎configs/data/default.yaml‎

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_target_: glm_experiments.data.dna_datamodule.MLMDataModule
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_target_: glm_experiments.data.lm_datamodule.MLMDataModule
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# Dataset and tokenizer (override in specific configs)
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dataset_name: data/gpn-animal-promoter-dataset

‎configs/experiment/clm_transformer_base.yaml‎

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tags: ["experiment", "clm", "transformer", "base"]
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data:
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_target_: glm_experiments.data.dna_datamodule.CLMDataModule
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_target_: glm_experiments.data.lm_datamodule.CLMDataModule
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per_device_batch_size: 256
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model:

‎configs/experiment/clm_transformer_small.yaml‎

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num_training_steps: ${trainer.max_steps}
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data:
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_target_: glm_experiments.data.dna_datamodule.CLMDataModule
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_target_: glm_experiments.data.lm_datamodule.CLMDataModule
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batch_size: 8
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per_device_batch_size: 8
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‎configs/experiment/mlm_transformer_base.yaml‎

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defaults:
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- override /data: gpn_animal_promoter
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- override /model: bert_transformer_base
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- override /model: mlm_transformer_base
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- override /trainer: gpn_animal_promoter
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logger:

‎configs/experiment/transformer_small.yaml‎

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# Short training run with small Transformer encoder for quick testing
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defaults:
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- override /model: bert_transformer_small
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- override /model: mlm_transformer_small
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logger:
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wandb:

configs/model/bert_transformer_base.yaml renamed to configs/model/mlm_transformer_base.yaml

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configs/model/bert_transformer_small.yaml renamed to configs/model/mlm_transformer_small.yaml

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glm_experiments/data/dna_datamodule.py renamed to glm_experiments/data/lm_datamodule.py

File renamed without changes.

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