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Contexts #5

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3c6921c
Update for new computation environment routines.
chrispbradley Apr 10, 2018
14d889e
Merge branch 'develop' of https://github.com/OpenCMISS-Examples/left_…
chrispbradley Apr 11, 2018
19e48b0
Fixes for contexts.
chrispbradley Apr 27, 2018
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23 changes: 14 additions & 9 deletions src/python/lib.py
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Original file line number Diff line number Diff line change
Expand Up @@ -27,18 +27,23 @@ def BasicSetUp(regionUserNumber, coordinateSystemUserNumber):
#"Diagnostics",["DOMAIN_MAPPINGS_LOCAL_FROM_GLOBAL_CALCULATE"])

# Get computational node information for parallel computing
numberOfComputationalNodes = iron.ComputationalNumberOfNodesGet()
computationalNodeNumber = iron.ComputationalNodeNumberGet()
computationEnvironment = iron.ComputationEnvironment()
iron.Context.ComputationEnvironmentGet(computationEnvironment)
numberOfComputationalNodes = computationEnvironment.NumberOfWorldNodesGet()
computationalNodeNumber = computationEnvironment.WorldNodeNumberGet()

# Set up 3D RC coordinate system
coordinateSystem = iron.CoordinateSystem()
coordinateSystem.CreateStart(coordinateSystemUserNumber)
coordinateSystem.CreateStart(coordinateSystemUserNumber,iron.Context)
coordinateSystem.dimension = 3
coordinateSystem.CreateFinish()

worldRegion = iron.Region()
iron.Context.WorldRegionGet(worldRegion)

# Create world region
region = iron.Region()
region.CreateStart(regionUserNumber, iron.WorldRegion)
region.CreateStart(regionUserNumber, worldRegion)
region.label = "Region"
region.coordinateSystem = coordinateSystem
region.CreateFinish()
Expand All @@ -57,7 +62,7 @@ def BasisFunction(basisUserNumber, numOfXi, option, collapsed):
if option[0] == 1:
# Trilinear basis function for interpolation of geometry.
basis = iron.Basis()
basis.CreateStart(basisUserNumber)
basis.CreateStart(basisUserNumber,iron.Context)
basis.numberOfXi = numOfXi
basis.type = iron.BasisTypes.LAGRANGE_HERMITE_TP
basis.interpolationXi = [iron.BasisInterpolationSpecifications.LINEAR_LAGRANGE] * numOfXi
Expand All @@ -68,7 +73,7 @@ def BasisFunction(basisUserNumber, numOfXi, option, collapsed):
print "----> Set up trilinear basis functions for geometry, use element based interpolation for pressure <----\n"
if collapsed:
basisCol = iron.Basis()
basisCol.CreateStart(basisUserNumber+1)
basisCol.CreateStart(basisUserNumber+1,iron.Context)
basisCol.numberOfXi = numOfXi
basisCol.type = iron.BasisTypes.LAGRANGE_HERMITE_TP
basisCol.interpolationXi = [iron.BasisInterpolationSpecifications.LINEAR_LAGRANGE] * numOfXi
Expand All @@ -81,15 +86,15 @@ def BasisFunction(basisUserNumber, numOfXi, option, collapsed):
return basis
elif option[0] == 2:
quadBasis = iron.Basis()
quadBasis.CreateStart(basisUserNumber[0])
quadBasis.CreateStart(basisUserNumber[0],iron.Context)
quadBasis.InterpolationXiSet([iron.BasisInterpolationSpecifications.QUADRATIC_LAGRANGE]*numOfXi)
quadBasis.QuadratureNumberOfGaussXiSet([4]*numOfXi)
quadBasis.QuadratureLocalFaceGaussEvaluateSet(True)
quadBasis.CreateFinish()

# Tricubic Hermite basis function for interpolation of geometry.
cubicBasis = iron.Basis() # For geometry.
cubicBasis.CreateStart(basisUserNumber[1])
cubicBasis.CreateStart(basisUserNumber[1],iron.Context)
cubicBasis.InterpolationXiSet([iron.BasisInterpolationSpecifications.CUBIC_HERMITE] * numOfXi)
cubicBasis.QuadratureNumberOfGaussXiSet([4] * numOfXi)
cubicBasis.QuadratureLocalFaceGaussEvaluateSet(True)
Expand Down Expand Up @@ -910,7 +915,7 @@ def ProblemSolverSetup(equationsSet,problemUserNumber,maxIter, TOL, cellMLOption
iron.ProblemTypes.FINITE_ELASTICITY,
iron.ProblemSubtypes.NONE]

problem.CreateStart(problemUserNumber, problemSpecification)
problem.CreateStart(problemUserNumber,iron.Context,problemSpecification)
problem.CreateFinish()
# Output
print "----> Set up problem <----\n"
Expand Down