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Contexts #4

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efbde37
Update for new computation environment routines.
chrispbradley Apr 10, 2018
eb9945a
Merge branch 'develop' of https://github.com/OpenCMISS-Examples/moone…
chrispbradley Apr 11, 2018
700f4d1
Fixes for contexts.
chrispbradley Apr 27, 2018
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33 changes: 20 additions & 13 deletions src/fortran/mooney_rivlin_cellml.F90
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
!> Main program
PROGRAM MOONEYRIVLININCELLMLEXAMPLE
PROGRAM MooneyRivlinInCellMLExample

USE OpenCMISS
USE OpenCMISS_Iron
Expand Down Expand Up @@ -106,7 +106,9 @@ PROGRAM MOONEYRIVLININCELLMLEXAMPLE

TYPE(cmfe_BasisType) :: QuadraticBasis, LinearBasis, Basis(2)
TYPE(cmfe_BoundaryConditionsType) :: BoundaryConditions
TYPE(cmfe_CoordinateSystemType) :: CoordinateSystem, WorldCoordinateSystem
TYPE(cmfe_ComputationEnvironmentType) :: computationEnvironment
TYPE(cmfe_ContextType) :: context
TYPE(cmfe_CoordinateSystemType) :: CoordinateSystem
TYPE(cmfe_GeneratedMeshType) :: GeneratedMesh
TYPE(cmfe_MeshType) :: Mesh
TYPE(cmfe_DecompositionType) :: Decomposition
Expand Down Expand Up @@ -174,18 +176,23 @@ PROGRAM MOONEYRIVLININCELLMLEXAMPLE
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!

!Intialise cmiss
CALL cmfe_Initialise(WorldCoordinateSystem,WorldRegion,Err)

CALL cmfe_ErrorHandlingModeSet(CMFE_ERRORS_TRAP_ERROR,Err)
CALL cmfe_Context_Initialise(context,err)
CALL cmfe_Initialise(context,err)
CALL cmfe_ErrorHandlingModeSet(CMFE_ERRORS_TRAP_ERROR,err)
CALL cmfe_Region_Initialise(worldRegion,err)
CALL cmfe_Context_WorldRegionGet(context,worldRegion,err)
CALL cmfe_Context_RandomSeedsSet(context,9999,err)

WRITE(*,'(A)') "Program starting."

!Set all diganostic levels on for testing
! CALL cmfe_DiagnosticsSetOn(CMFE_FROM_DIAG_TYPE,[1,2,3,4,5],"Diagnostics",["PROBLEM_FINITE_ELEMENT_CALCULATE"],Err)

!Get the number of computational nodes and this computational node number
CALL cmfe_ComputationalNumberOfNodesGet(NumberOfComputationalNodes,Err)
CALL cmfe_ComputationalNodeNumberGet(ComputationalNodeNumber,Err)
CALL cmfe_ComputationEnvironment_Initialise(computationEnvironment,err)
CALL cmfe_Context_ComputationEnvironmentGet(context,computationEnvironment,err)
CALL cmfe_ComputationEnvironment_NumberOfWorldNodesGet(computationEnvironment,numberOfComputationalNodes,err)
CALL cmfe_ComputationEnvironment_WorldNodeNumberGet(computationEnvironment,computationalNodeNumber,err)

!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!

Expand All @@ -199,7 +206,7 @@ PROGRAM MOONEYRIVLININCELLMLEXAMPLE

!Create a CS - default is 3D rectangular cartesian CS with 0,0,0 as origin
CALL cmfe_CoordinateSystem_Initialise(CoordinateSystem,Err)
CALL cmfe_CoordinateSystem_CreateStart(CoordinateSystemUserNumber,CoordinateSystem,Err)
CALL cmfe_CoordinateSystem_CreateStart(CoordinateSystemUserNumber,context,CoordinateSystem,Err)
CALL cmfe_CoordinateSystem_TypeSet(CoordinateSystem,CMFE_COORDINATE_RECTANGULAR_CARTESIAN_TYPE,Err)
CALL cmfe_CoordinateSystem_DimensionSet(CoordinateSystem,NumberOfSpatialCoordinates,Err)
CALL cmfe_CoordinateSystem_OriginSet(CoordinateSystem,[0.0_CMISSRP,0.0_CMISSRP,0.0_CMISSRP],Err)
Expand All @@ -214,7 +221,7 @@ PROGRAM MOONEYRIVLININCELLMLEXAMPLE

!Define basis functions - tri-Quadratic Lagrange and tri-Linear Lagrange
CALL cmfe_Basis_Initialise(QuadraticBasis,Err)
CALL cmfe_Basis_CreateStart(QuadraticBasisUserNumber,QuadraticBasis,Err)
CALL cmfe_Basis_CreateStart(QuadraticBasisUserNumber,context,QuadraticBasis,Err)
CALL cmfe_Basis_TypeSet(QuadraticBasis,CMFE_BASIS_LAGRANGE_HERMITE_TP_TYPE,Err)
CALL cmfe_Basis_NumberOfXiSet(QuadraticBasis,NumberOfXiCoordinates,Err)
CALL cmfe_Basis_InterpolationXiSet(QuadraticBasis,[CMFE_BASIS_QUADRATIC_LAGRANGE_INTERPOLATION, &
Expand All @@ -224,7 +231,7 @@ PROGRAM MOONEYRIVLININCELLMLEXAMPLE
CALL cmfe_Basis_CreateFinish(QuadraticBasis,Err)

CALL cmfe_Basis_Initialise(LinearBasis,Err)
CALL cmfe_Basis_CreateStart(LinearBasisUserNumber,LinearBasis,Err)
CALL cmfe_Basis_CreateStart(LinearBasisUserNumber,context,LinearBasis,Err)
CALL cmfe_Basis_TypeSet(LinearBasis,CMFE_BASIS_LAGRANGE_HERMITE_TP_TYPE,Err)
CALL cmfe_Basis_NumberOfXiSet(LinearBasis,NumberOfXiCoordinates,Err)
CALL cmfe_Basis_InterpolationXiSet(LinearBasis,[CMFE_BASIS_LINEAR_LAGRANGE_INTERPOLATION, &
Expand Down Expand Up @@ -542,7 +549,7 @@ PROGRAM MOONEYRIVLININCELLMLEXAMPLE

!Define the problem
CALL cmfe_Problem_Initialise(Problem,Err)
CALL cmfe_Problem_CreateStart(ProblemUserNumber,[CMFE_PROBLEM_ELASTICITY_CLASS,CMFE_PROBLEM_FINITE_ELASTICITY_TYPE, &
CALL cmfe_Problem_CreateStart(ProblemUserNumber,context,[CMFE_PROBLEM_ELASTICITY_CLASS,CMFE_PROBLEM_FINITE_ELASTICITY_TYPE, &
& CMFE_PROBLEM_FINITE_ELASTICITY_WITH_CELLML_SUBTYPE],Problem,Err)
CALL cmfe_Problem_CreateFinish(Problem,Err)

Expand Down Expand Up @@ -652,7 +659,7 @@ PROGRAM MOONEYRIVLININCELLMLEXAMPLE
CALL cmfe_Fields_ElementsExport(Fields,"./results/MooneyRivlinInCellML","FORTRAN",Err)
CALL cmfe_Fields_Finalise(Fields,Err)

CALL cmfe_Finalise(Err)
CALL cmfe_Finalise(context,Err)

WRITE(*,'(A)') "Program successfully completed."

Expand All @@ -674,5 +681,5 @@ END SUBROUTINE HANDLE_ERROR
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!


END PROGRAM MOONEYRIVLININCELLMLEXAMPLE
END PROGRAM MooneyRivlinInCellMLExample