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Merged
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Feb 17, 2025
Merged

Contexts #7

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326e2af
Update for new computation environment routines.
chrispbradley Apr 10, 2018
c27f4b0
Merge branch 'develop' of https://github.com/OpenCMISS-Examples/uniax…
chrispbradley Apr 11, 2018
8fd9ffd
Fixes for contexts.
chrispbradley Apr 27, 2018
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42 changes: 25 additions & 17 deletions src/fortran/uniaxial_extension.F90
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
PROGRAM UNIAXIAL_EXTENSION
PROGRAM UniaxialExtension

#ifndef NOMPIMOD
USE MPI
Expand All @@ -16,14 +16,17 @@ PROGRAM UNIAXIAL_EXTENSION
#include "mpif.h"
#endif

TYPE(cmfe_ContextType) :: context
TYPE(cmfe_RegionType) :: worldRegion
TYPE(cmfe_CoordinateSystemType) :: worldCoordinateSystem

INTEGER(CMISSIntg) :: Err

! Intialise cmiss
CALL cmfe_Initialise(worldCoordinateSystem,worldRegion,Err)
CALL cmfe_ErrorHandlingModeSet(CMFE_ERRORS_TRAP_ERROR,Err)
CALL cmfe_Context_Initialise(context,err)
CALL cmfe_Initialise(context,err)
CALL cmfe_ErrorHandlingModeSet(CMFE_ERRORS_TRAP_ERROR,err)
CALL cmfe_Region_Initialise(worldRegion,err)
CALL cmfe_Context_WorldRegionGet(context,worldRegion,err)

! Input arguments: compressible, useGeneratedMesh, zeroLoad, useSimplex, usePressureBasis

Expand All @@ -34,7 +37,7 @@ PROGRAM UNIAXIAL_EXTENSION
CALL SOLVE_MODEL(.FALSE., .FALSE., .FALSE., .TRUE., .FALSE.)
CALL SOLVE_MODEL(.FALSE., .TRUE., .FALSE., .FALSE., .TRUE.)

CALL cmfe_Finalise(Err)
CALL cmfe_Finalise(context,Err)

STOP

Expand Down Expand Up @@ -83,6 +86,7 @@ SUBROUTINE SOLVE_MODEL(compressible, useGeneratedMesh, zeroLoad, useSimplex, use
INTEGER(CMISSIntg) :: numberOfMeshComponents = 1
INTEGER(CMISSIntg) :: meshComponentNumber = 1

INTEGER(CMISSIntg) :: contextUserNumber
INTEGER(CMISSIntg) :: numberOfComputationalNodes,computationalNodeNumber
INTEGER(CMISSIntg) :: componentIdx,Err,numberOfMaterialComponents
INTEGER(CMISSIntg) :: numberOfXi,quadratureOrder
Expand All @@ -93,6 +97,7 @@ SUBROUTINE SOLVE_MODEL(compressible, useGeneratedMesh, zeroLoad, useSimplex, use

TYPE(cmfe_BasisType) :: basis,pressureBasis
TYPE(cmfe_BoundaryConditionsType) :: boundaryConditions
TYPE(cmfe_ComputationEnvironmentType) :: computationEnvironment
TYPE(cmfe_CoordinateSystemType) :: coordinateSystem
TYPE(cmfe_DecompositionType) :: decomposition
TYPE(cmfe_EquationsType) :: equations
Expand Down Expand Up @@ -136,11 +141,13 @@ SUBROUTINE SOLVE_MODEL(compressible, useGeneratedMesh, zeroLoad, useSimplex, use
END IF

! Get the number of computational nodes and this computational node number
CALL cmfe_ComputationalNumberOfNodesGet(numberOfComputationalNodes,Err)
CALL cmfe_ComputationalNodeNumberGet(computationalNodeNumber,Err)
CALL cmfe_ComputationEnvironment_Initialise(computationEnvironment,err)
CALL cmfe_Context_ComputationEnvironmentGet(context,computationEnvironment,err)
CALL cmfe_ComputationEnvironment_NumberOfWorldNodesGet(computationEnvironment,numberOfComputationalNodes,err)
CALL cmfe_ComputationEnvironment_WorldNodeNumberGet(computationEnvironment,computationalNodeNumber,err)

CALL cmfe_CoordinateSystem_Initialise(coordinateSystem,Err)
CALL cmfe_CoordinateSystem_CreateStart(coordinateSystemUserNumber,coordinateSystem,Err)
CALL cmfe_CoordinateSystem_CreateStart(coordinateSystemUserNumber,context,coordinateSystem,Err)
CALL cmfe_CoordinateSystem_DimensionSet(coordinateSystem,3,Err)
CALL cmfe_CoordinateSystem_CreateFinish(coordinateSystem,Err)

Expand All @@ -153,7 +160,7 @@ SUBROUTINE SOLVE_MODEL(compressible, useGeneratedMesh, zeroLoad, useSimplex, use

! Define basis
CALL cmfe_Basis_Initialise(basis,Err)
CALL cmfe_Basis_CreateStart(basisUserNumber,basis,Err)
CALL cmfe_Basis_CreateStart(basisUserNumber,context,basis,Err)
SELECT CASE (interpolationType)
CASE(1,2,3,4)
CALL cmfe_Basis_TypeSet(basis,CMFE_BASIS_LAGRANGE_HERMITE_TP_TYPE,Err)
Expand Down Expand Up @@ -197,7 +204,7 @@ SUBROUTINE SOLVE_MODEL(compressible, useGeneratedMesh, zeroLoad, useSimplex, use
IF (usePressureBasis) THEN
! Define pressure basis
CALL cmfe_Basis_Initialise(pressureBasis,Err)
CALL cmfe_Basis_CreateStart(pressureBasisUserNumber,pressureBasis,Err)
CALL cmfe_Basis_CreateStart(pressureBasisUserNumber,context,pressureBasis,Err)
SELECT CASE (interpolationType)
CASE(1,2,3,4)
CALL cmfe_Basis_TypeSet(pressureBasis,CMFE_BASIS_LAGRANGE_HERMITE_TP_TYPE,Err)
Expand Down Expand Up @@ -531,7 +538,7 @@ SUBROUTINE SOLVE_MODEL(compressible, useGeneratedMesh, zeroLoad, useSimplex, use

! Define the problem
CALL cmfe_Problem_Initialise(problem,Err)
CALL cmfe_Problem_CreateStart(problemUserNumber, &
CALL cmfe_Problem_CreateStart(problemUserNumber,context, &
& [CMFE_PROBLEM_ELASTICITY_CLASS, &
& CMFE_PROBLEM_FINITE_ELASTICITY_TYPE, &
& CMFE_PROBLEM_NO_SUBTYPE],problem,Err)
Expand Down Expand Up @@ -661,13 +668,14 @@ SUBROUTINE SOLVE_MODEL(compressible, useGeneratedMesh, zeroLoad, useSimplex, use
CALL cmfe_Fields_ElementsExport(fields,trim(output_file)//trim(prefix),"FORTRAN",Err)
CALL cmfe_Fields_Finalise(fields,Err)

CALL cmfe_Problem_Destroy(ProblemUserNumber,Err)
CALL cmfe_Context_UserNumberGet(context,contextUserNumber,err)
CALL cmfe_Problem_Destroy(contextUserNumber,ProblemUserNumber,Err)
IF (useGeneratedMesh) THEN
CALL cmfe_GeneratedMesh_Destroy(RegionUserNumber,GeneratedMeshUserNumber,Err)
CALL cmfe_GeneratedMesh_Destroy(contextUserNumber,RegionUserNumber,GeneratedMeshUserNumber,Err)
END IF
CALL cmfe_Basis_Destroy(BasisUserNumber,Err)
CALL cmfe_Region_Destroy(RegionUserNumber,Err)
CALL cmfe_CoordinateSystem_Destroy(CoordinateSystemUserNumber,Err)
CALL cmfe_Basis_Destroy(contextUserNumber,BasisUserNumber,Err)
CALL cmfe_Region_Destroy(contextUserNumber,RegionUserNumber,Err)
CALL cmfe_CoordinateSystem_Destroy(contextUserNumber,CoordinateSystemUserNumber,Err)

WRITE(*,'(A)') "Program successfully completed."

Expand All @@ -680,4 +688,4 @@ SUBROUTINE HANDLE_ERROR(ERROR_STRING)
STOP
END SUBROUTINE HANDLE_ERROR

END PROGRAM UNIAXIAL_EXTENSION
END PROGRAM UniaxialExtension
19 changes: 12 additions & 7 deletions src/python/uniaxial_extension.py
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Expand Up @@ -52,26 +52,31 @@ def solveModel(compressible, useGeneratedMesh, zeroLoad, usePressureBasis):
else:
numberOfXi = 3

worldRegion = iron.Region()
iron.Context.WorldRegionGet(worldRegion)

# Get the number of computational nodes and this computational node number
numberOfComputationalNodes = iron.ComputationalNumberOfNodesGet()
computationalNodeNumber = iron.ComputationalNodeNumberGet()
computationEnvironment = iron.ComputationEnvironment()
iron.Context.ComputationEnvironmentGet(computationEnvironment)
numberOfComputationalNodes = computationEnvironment.NumberOfWorldNodesGet()
computationalNodeNumber = computationEnvironment.WorldNodeNumberGet()

# Create a 3D rectangular cartesian coordinate system
coordinateSystem = iron.CoordinateSystem()
coordinateSystem.CreateStart(coordinateSystemUserNumber)
coordinateSystem.CreateStart(coordinateSystemUserNumber,iron.Context)
coordinateSystem.DimensionSet(3)
coordinateSystem.CreateFinish()

# Create a region and assign the coordinate system to the region
region = iron.Region()
region.CreateStart(regionUserNumber,iron.WorldRegion)
region.CreateStart(regionUserNumber,worldRegion)
region.LabelSet("Region")
region.coordinateSystem = coordinateSystem
region.CreateFinish()

# Define basis
basis = iron.Basis()
basis.CreateStart(basisUserNumber)
basis.CreateStart(basisUserNumber,iron.Context)
if InterpolationType in (1,2,3,4):
basis.type = iron.BasisTypes.LAGRANGE_HERMITE_TP
elif InterpolationType in (7,8,9):
Expand All @@ -85,7 +90,7 @@ def solveModel(compressible, useGeneratedMesh, zeroLoad, usePressureBasis):
if(usePressureBasis):
# Define pressure basis
pressureBasis = iron.Basis()
pressureBasis.CreateStart(pressureBasisUserNumber)
pressureBasis.CreateStart(pressureBasisUserNumber,iron.Context)
if InterpolationType in (1,2,3,4):
pressureBasis.type = iron.BasisTypes.LAGRANGE_HERMITE_TP
elif InterpolationType in (7,8,9):
Expand Down Expand Up @@ -330,7 +335,7 @@ def solveModel(compressible, useGeneratedMesh, zeroLoad, usePressureBasis):
problemSpecification = [iron.ProblemClasses.ELASTICITY,
iron.ProblemTypes.FINITE_ELASTICITY,
iron.ProblemSubtypes.NONE]
problem.CreateStart(problemUserNumber, problemSpecification)
problem.CreateStart(problemUserNumber,iron.Context,problemSpecification)
problem.CreateFinish()

# Create control loops
Expand Down