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Error building OC_SUNDIALS #20

@abdallahhassaballah

Description

@abdallahhassaballah

I have been trying to build OpenCMISS iron (Ubuntu 20.04.2 LTS, gcc 9, gfortran 9) using the following commands:

git clone https://github.com/OpenCMISS/setup.git
mkdir opencmiss
mkdir setup-build
cd setup-build

export CC=gcc
export CXX=g++
export FC=gfortran

cmake -DOPENCMISS_ROOT=../opencmiss -DOPENCMISS_LIBRARIES=iron ../setup
make

However, the compiler fails at OC_SUNDIALS:

[ 0%] Performing configure step for 'OC_SUNDIALS'
CMake Error at extproj/stamp/OC_SUNDIALS-configure-Release.cmake:49 (message):
Command failed: 1

'/usr/bin/cmake' '--no-warn-unused-cli' '-DCMAKE_PREFIX_PATH=/hpc/ahas804/opt/OpenCMISS/bn339996/opencmiss/install/cmake' '-DCMAKE_MODULE_PATH=/hpc/ahas804/opt/OpenCMISS/bn339996/opencmiss/install/share/cmake/Modules/OpenCMISS;/hpc/ahas804/opt/OpenCMISS/bn339996/opencmiss/install/share/cmake/Modules/FindModuleWrappers;/hpc/ahas804/opt/OpenCMISS/bn339996/opencmiss/install/share/cmake/Modules' '-DPACKAGE_CONFIG_DIR=cmake' '-DCMAKE_NO_SYSTEM_FROM_IMPORTED=YES' '-DCMAKE_DEBUG_POSTFIX=d' '-DCMAKE_POSITION_INDEPENDENT_CODE=YES' '-DOPENCMISS_INSTRUMENTATION=' '-DWARN_ALL=YES' '-DCHECK_ALL=YES' '-DCMAKE_INSTALL_DEFAULT_COMPONENT_NAME=Development' '-DCMAKE_INSTALL_PREFIX:PATH=/hpc/ahas804/opt/OpenCMISS/bn339996/opencmiss/install' '-DCMAKE_BUILD_TYPE=Release' '-DBUILD_SHARED_LIBS=OFF' '-DMPIEXEC_EXECUTABLE=/usr/bin/mpiexec' '-DMPI_VERSION=' '-DMPI_C_COMPILER=/usr/bin/mpicc' '-DCMAKE_C_COMPILER=/usr/bin/gcc' '-DCMAKE_C_FLAGS_RELEASE=-O3 -DNDEBUG -Ofast' '-DCMAKE_C_FLAGS_DEBUG=-g -O0 -Wall' '-DMPI_CXX_COMPILER=/usr/bin/mpicxx' '-DCMAKE_CXX_COMPILER=/usr/bin/g++' '-DCMAKE_CXX_FLAGS_RELEASE=-O3 -DNDEBUG -Ofast' '-DCMAKE_CXX_FLAGS_DEBUG=-g -O0 -Wall' '-DMPI_Fortran_COMPILER=/usr/bin/mpif77' '-DCMAKE_Fortran_COMPILER=/usr/bin/gfortran' '-DCMAKE_Fortran_FLAGS_RELEASE=-O3 -DNDEBUG -O3 -Ofast' '-DCMAKE_Fortran_FLAGS_DEBUG=-g -O0 -Wall -fbacktrace -Warray-temporaries -Wextra -Wsurprising -Wrealloc-lhs-all -finit-real=snan -fcheck=all' '-DBUILD_PRECISION=sd' '-DBUILD_TESTS=ON' '-DBLA_VENDOR=All' '-DUSE_MPI=TRUE' '-DUSE_LAPACK=ON' '-DZLIB_FIND_SYSTEM=OFF' '-DZLIB_VERSION=1.2.3' '-DLAPACK_FIND_SYSTEM=ON' '-DLAPACK_VERSION=3.5.0' '-GUnix Makefiles' '/hpc/ahas804/opt/OpenCMISS/bn339996/opencmiss/src/dependencies/sundials'

See also

/hpc/ahas804/opt/OpenCMISS/bn339996/opencmiss/build/dependencies/sundials/release/extproj/stamp/OC_SUNDIALS-configure-*.log

make[8]: *** [CMakeFiles/OC_SUNDIALS.dir/build.make:107: /hpc/ahas804/opt/OpenCMISS/bn339996/opencmiss/build/dependencies/sundials/release/extproj/stamp/OC_SUNDIALS-configure] Error 1
make[7]: *** [CMakeFiles/Makefile2:6010: CMakeFiles/OC_SUNDIALS.dir/all] Error 2
make[6]: *** [Makefile:141: all] Error 2
make[5]: *** [CMakeFiles/manage_config.dir/build.make:69: config/Release/stamp/manage_config-build] Error 2
make[4]: *** [CMakeFiles/Makefile2:348: CMakeFiles/manage_config.dir/all] Error 2
make[3]: *** [Makefile:95: all] Error 2
make[2]: *** [CMakeFiles/setup_manage.dir/build.make:113: setup_manage-prefix/src/setup_manage-stamp/setup_manage-build] Error 2
make[1]: *** [CMakeFiles/Makefile2:106: CMakeFiles/setup_manage.dir/all] Error 2
make: *** [Makefile:84: all] Error 2

config_build_info.zip

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