tomviz/.github/workflows/build_and_test.yml at c3c8392b9c785e11f2458824abc3b580ae9f53ca · OpenChemistry/tomviz · GitHub

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name: build and test

on:
  push:
    branches: [ master ]
  pull_request:
    branches: [ master ]

jobs:
  test:
    name: ${{ matrix.config.name }} (Python ${{ matrix.python-version}})
    runs-on: ${{ matrix.config.os }}
    strategy:
      fail-fast: false
      matrix:
        python-version: [3.11, 3.12, 3.13]
        config:
        - {
            name: Linux,
            os: ubuntu-latest
          }

    defaults:
      run:
        # Using a login shell is necessary to persist the conda environment
        shell: bash -l {0}

    steps:
    - name: Set up Miniconda
      uses: conda-incubator/setup-miniconda@v3
      with:
        channels: conda-forge
        conda-remove-defaults: "true"
        auto-update-conda: true
        conda-solver: libmamba
        python-version: ${{ matrix.python-version }}
        activate-environment: tomviz

    - name: Checkout Tomviz
      uses: actions/checkout@v5
      with:
        submodules: recursive
        path: tomviz

    - name: Install Build Requirements
      # I can't get the defaults channel fully removed, so we have to
      # --override-channels here.
      run: |
        conda install -y --override-channels -c conda-forge --file tomviz/.github/workflows/build_requirements.txt
        # Record the whole build environment for caching
        conda env export > build_env.yml
        echo "build_env.yml file contents is:"
        cat build_env.yml

    - name: Build Tomviz
      run: bash tomviz/.github/workflows/scripts/build_tomviz.sh

    - name: Install Runtime Requirements
      # I can't get the defaults channel fully removed, so we have to
      # --override-channels here.
      run: conda install -y --override-channels -c conda-forge --file tomviz/.github/workflows/runtime_requirements.txt

    - name: Install Test Requirements
      run: |
        conda install -y --override-channels -c conda-forge --file tomviz/tests/python/requirements-dev.txt
        pip install --no-build-isolation --no-deps -U tomviz/tomviz/python
        pip install --no-build-isolation --no-deps -U tomviz/acquisition

    - name: Run Tests
      run: |
        cd tomviz-build
        TOMVIZ_TEST_PYTHON_EXECUTABLE=$(which python3) ctest --output-on-failure

    - name: Upload CTest Log (On Failure Only)
      if: ${{ failure() }}
      uses: actions/upload-artifact@v4
      with:
        name: TomvizCTestLog.log
        path: tomviz-build/Testing/Temporary/LastTest.log