Merge pull request #1674 from knutfrode/dev

[run-ex] Fixed problem with deactivation of elements outside user-def…

Author: knutfrode

opendrift/export/io_netcdf.py

@@ -73,6 +73,7 @@ def close(self):
                 self.outfile[var].setncattr(atn, atv)
     for atn, atv in self.result.attrs.items():  # Updating global attributes
         self.outfile.setncattr(atn, atv)
+    self.outfile.sync()  # Flush from memory to disk
     self.outfile.close()  # Finally close file
     logger.debug('Closed netCDF-file')
 

opendrift/models/basemodel/__init__.py

@@ -2120,6 +2120,8 @@ def run(self,
 
                 self.report_missing_variables(missing)
 
+                self.deactivate_outside()
+
                 self.interact_with_coastline()
 
                 self.interact_with_seafloor()
@@ -2220,6 +2222,7 @@ def increase_age_and_retire(self):
                 >= self.get_config('drift:max_age_seconds'),
                 reason='retired')
 
+    def deactivate_outside(self):
         # Deacticate any elements outside validity domain set by user
         if self.validity_domain is not None:
             W, E, S, N = self.validity_domain