cleaning up workflow

Author: atravitz

.binder/overrides.json

@@ -1,4 +1,4 @@
-name: full_tests
+name: Full Tests
 
 on:
   push:
@@ -33,15 +33,15 @@ jobs:
         python-version: ["3.12"]
 
     steps:
-    - uses: actions/checkout@v2.4.0
+    - uses: actions/checkout@v4
 
     - name: Get current date
       id: date
       run: echo "date=$(date +%Y-%m-%d)" >> "${GITHUB_OUTPUT}"
 
-    - uses: mamba-org/setup-micromamba@v1
+    - uses: mamba-org/setup-micromamba@v2
       with:
-        environment-file: .binder/environment.yml
+        environment-file: environment.yml
         cache-environment: true
         cache-downloads: true
         cache-environment-key: environment-${{ steps.date.outputs.date }}

.binder/postBuild

@@ -3,7 +3,6 @@ channels:
   - conda-forge
 dependencies:
   - MDAnalysis
-  - click
   - coverage
   - ipywidgets
   - lomap2
@@ -17,12 +16,10 @@ dependencies:
   - openmm
   - openmmtools>=0.23.0
   - pip
-  - plugcli
   - pymbar
   - pytest
   - pytest-cov
   - pytest-xdist
-  - pydantic
   - python
   - rdkit
   - typing_extensions