Dear FastV developers,
Is there a way to estimate abundance of a genome with proportion of reads matched by fastv?
For an example genome mapped by fastv, if we are seeing 381 k-mer keys matched with 824 kmer hits, coverage 74.8%, showing a median depth of 1 and mean depth of 2.16, how can we deduce the abundance of such an example genome detected in a sample.
Can you please share your thoughts?
Thanks,
Intikhab
Dear FastV developers,
Is there a way to estimate abundance of a genome with proportion of reads matched by fastv?
For an example genome mapped by fastv, if we are seeing 381 k-mer keys matched with 824 kmer hits, coverage 74.8%, showing a median depth of 1 and mean depth of 2.16, how can we deduce the abundance of such an example genome detected in a sample.
Can you please share your thoughts?
Thanks,
Intikhab