I get the following error message immediately:
xz: (stdin): Cannot allocate memory
ERROR: failed to call xz, please confirm that xz is installed in your system
when I run:
sbatch -c 16 --mem 10000 --wrap "repaq -c -i file_1_trimmed.fastq.gz -I file_2_trimmed.fastq.gz -o file.fpq.xz --compression 9 --thread 16"
I installed repaq and xz with the following commands in a fresh conda environment:
conda install -c bioconda repaq
conda install conda-forge::xz
Help would be much appreciated