data-template

# -*- getpot -*- (GetPot mode activation for emacs)
#-------------------------------------------------
#      Data file for meshtools3d utility 
#-------------------------------------------------
#  this file will be parsered; in this example all options are reported
# if no option is specified, a default one will be taken inside the code
# see CGAL doc for meshing otpions.

[segmentation]
seg_dir                = /home/common/CGAL-4.6/examples/Mesh_3/data
seg_name               = liver.inr.gz
mesh_from_segmentation = 1  # tells is read directly segmentation or use a special treatment (mneshing with no-labels, then labeling)
boundary_relabeling    = 1 #Tells if applying the boundary relabelling; default True  (1)

[meshing]
readTheMesh        = 0
mesh_dir           = /home/meshes
mesh_name          = liver
facet_angle         = 30
facet_size          = 6.0
facet_distance      = 4
cell_rad_edge_ratio = 1.4
cell_size           = 8.0
rescaleFactor       = 1.0  # rescaling for carp and vtk output 

[laplacesolver]
abs_toll        = 1e-6
rel_toll        = 1e-6
itr_max         = 500
dimKrilovSp     = 150
verbose         = 0 

[others]
eval_thickness  = 1
swapregions     = 0  #if 0[default]: thickness on the endocardium; 1:thickness points are assigned to the epicardium
thickalgo       = 1  #1: Martin Bishop Algorithm; 2: Cesare Corrado Algorithm


[output]
outdir          = /home/cc14/cgalTests/liver
name            = liver
out_medit       = 1
out_carp        = 1
out_carp_binary = 0
out_vtk         = 1
out_vtk_binary  = 1
out_potential   = 1
debug_output    = 0
debug_frequency = 100