Migrate FLASHApp visualizations to OpenMS-Insight components #53
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| name: Unit Tests | |
| # Runs the Python unit tests in tests/ (pytest). This is intentionally | |
| # separate from build-and-test.yml, whose "test" jobs are container/k8s | |
| # deployment smoke tests rather than pytest. | |
| on: | |
| push: | |
| branches: [develop] | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| pytest: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| # Match the runtime built in the Dockerfile (python=3.11). | |
| python-version: "3.11" | |
| cache: pip | |
| cache-dependency-path: requirements.txt | |
| - name: Set up Node | |
| # Needed to build the OpenMS-Insight Vue bundle (see install step). | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: "21" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| # OpenMS-Insight is declared in requirements.txt as a git dependency, | |
| # but its wheel force-includes a Vue bundle that is gitignored, so a | |
| # raw `pip install git+…` fails at metadata generation. Build the | |
| # bundle and install from the checkout, mirroring the Dockerfiles and | |
| # .claude/hooks/session-start.sh. | |
| git clone --depth 1 --branch claude/peaceful-mayer-YqiXZ \ | |
| https://github.com/t0mdavid-m/OpenMS-Insight.git /tmp/openms-insight | |
| (cd /tmp/openms-insight/js-component && npm install --no-audit --no-fund && npm run build) | |
| mkdir -p /tmp/openms-insight/openms_insight/js-component | |
| cp -r /tmp/openms-insight/js-component/dist \ | |
| /tmp/openms-insight/openms_insight/js-component/dist | |
| pip install /tmp/openms-insight | |
| # Remaining deps minus the openms-insight git line (installed above); | |
| # pyopenms is needed so ParameterManager imports cleanly at collection | |
| # time. fakeredis backs the QueueManager/WorkflowManager tests. | |
| grep -ivE '^openms-insight[[:space:]]*[@=<>!~]' requirements.txt > /tmp/req.txt | |
| pip install -r /tmp/req.txt | |
| pip install pytest fakeredis | |
| - name: Run unit tests | |
| run: pytest tests/ -v |