From 3da5f6d8bff27469b4ddb5c1b6819f43dad1911d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Tom=20David=20M=C3=BCller?=
 <57191390+t0mdavid-m@users.noreply.github.com>
Date: Thu, 8 May 2025 11:25:00 +0200
Subject: [PATCH 1/5] update pyopenms version numbers

---
 docs/source/_static/switcher.json | 7 ++++++-
 docs/source/conf.py               | 2 +-
 2 files changed, 7 insertions(+), 2 deletions(-)

diff --git a/docs/source/_static/switcher.json b/docs/source/_static/switcher.json
index 9dc098d88..bf22de9f6 100644
--- a/docs/source/_static/switcher.json
+++ b/docs/source/_static/switcher.json
@@ -1,9 +1,14 @@
 [
   {
       "name": "nightly",
-      "version": "3.4.0dev",
+      "version": "3.5.0dev",
       "url": "https://pyopenms.readthedocs.io/en/latest/"
   },
+  {
+    "name": "3.4.0",
+    "version": "3.4.0",
+    "url": "https://pyopenms.readthedocs.io/en/release-3.4.0/"
+},
   {
       "name": "3.3.0",
       "version": "3.3.0",
diff --git a/docs/source/conf.py b/docs/source/conf.py
index b3ab856bb..d813c7fa9 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -86,7 +86,7 @@
 # built documents.
 #
 # The short X.Y version.
-version = u'3.3.0'
+version = u'3.4.0'
 # The full version, including alpha/beta/rc tags.
 release = version
 rtd_branch = os.environ.get('READTHEDOCS_GIT_IDENTIFIER', '')

From 696945abeca244c32420f9f6a71227eeb76e1754 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Tom=20David=20M=C3=BCller?=
 <57191390+t0mdavid-m@users.noreply.github.com>
Date: Thu, 8 May 2025 11:32:08 +0200
Subject: [PATCH 2/5] fix sphinx dependency

---
 requirements.txt | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/requirements.txt b/requirements.txt
index fc5000fcc..27cb8ad09 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -12,5 +12,7 @@ pyviz_comms
 jupyter-server-proxy
 massql
 sphinx-hoverxref
+# Dependency of Sphinx, the 3.0 release breaks it (currently)
+snowballstemmer<3
 
 pyopenms

From 6d0e3e3a11b9ea361e77d642f300e63a3f7a1fae Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Tom=20David=20M=C3=BCller?=
 <57191390+t0mdavid-m@users.noreply.github.com>
Date: Thu, 8 May 2025 11:37:21 +0200
Subject: [PATCH 3/5] use python 311

---
 .github/workflows/test-pr-sphinx.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/test-pr-sphinx.yml b/.github/workflows/test-pr-sphinx.yml
index e47fa3883..b18676444 100644
--- a/.github/workflows/test-pr-sphinx.yml
+++ b/.github/workflows/test-pr-sphinx.yml
@@ -21,7 +21,7 @@ jobs:
 
     - uses: actions/setup-python@v4
       with:
-        python-version: '3.10' # Version range or exact version of a Python version to use, using SemVer's version range syntax    
+        python-version: '3.11' # Version range or exact version of a Python version to use, using SemVer's version range syntax    
 
     - name: Installing Dependencies
       run: pip install -r docs/requirements.txt

From 8a09a583d8d76a974ae2f7243e9b9701c3972ea8 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Tom=20David=20M=C3=BCller?=
 <57191390+t0mdavid-m@users.noreply.github.com>
Date: Thu, 8 May 2025 11:46:53 +0200
Subject: [PATCH 4/5] change requirements order

---
 requirements.txt | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/requirements.txt b/requirements.txt
index 27cb8ad09..1e58405e8 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,3 +1,5 @@
+# Dependency of Sphinx, the 3.0 release breaks it (currently)
+snowballstemmer<3
 matplotlib
 plotly
 pandas
@@ -12,7 +14,6 @@ pyviz_comms
 jupyter-server-proxy
 massql
 sphinx-hoverxref
-# Dependency of Sphinx, the 3.0 release breaks it (currently)
-snowballstemmer<3
+
 
 pyopenms

From 0c2e66959ca6dd1f1ade251740e83f02dab2a042 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Tom=20David=20M=C3=BCller?=
 <57191390+t0mdavid-m@users.noreply.github.com>
Date: Thu, 8 May 2025 11:48:41 +0200
Subject: [PATCH 5/5] change requirements

---
 docs/requirements.txt | 2 ++
 requirements.txt      | 2 --
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/docs/requirements.txt b/docs/requirements.txt
index 7e5bcba3e..e1a8e5cf8 100644
--- a/docs/requirements.txt
+++ b/docs/requirements.txt
@@ -8,6 +8,8 @@ sphinx-remove-toctrees
 ## for pygment coloring of code snippets using ipython syntax
 ipython
 pygments-lexer-pseudocode
+# Dependency of Sphinx, the 3.0 release breaks it (currently)
+snowballstemmer<3
 
 --extra-index-url https://pypi.cs.uni-tuebingen.de/simple/
 pyopenms
\ No newline at end of file
diff --git a/requirements.txt b/requirements.txt
index 1e58405e8..76a798e56 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,5 +1,3 @@
-# Dependency of Sphinx, the 3.0 release breaks it (currently)
-snowballstemmer<3
 matplotlib
 plotly
 pandas