Merge branch 'edge' into pd-retract

Author: syao1226

.codecov.yml

@@ -1,27 +1,55 @@
+version: 2.0
+
+coverage:
+  status:
+    project:
+      default:
+        target: auto
+        threshold: '10'
+    patch:
+      default:
+        target: auto
+        threshold: 0
+
+comment:
+  layout: 'reach, diff, flags, files'
+
 ignore:
-  - '**/node_modules'
-  - 'webpack-config'
-  - 'hardware-testing'
-  - '**/*.md'
-  - '**/*.yaml'
+  - 'webpack-config/**'
+  - 'hardware-testing/**'
+  - 'abr-testing/**'
+  - 'test-data-generation/**'
+  - 'performance-metrics/**'
+  - 'package-testing/**'
+  - 'opentrons-ai-server/**'
+  - 'opentrons-ai-client/**'
+  - 'g-code-testing/**'
+  - 'api-client/**'
+  - 'analyses-snapshot-testing/**'
+  - '.storybook/**'
+  - 'react-api-client/**'
+  - 'scripts/**'
+  - '.github/**'
+  - '**/build/**'
+  - '**/dist/**'
+  - '**/node_modules/**'
+  - '**/{test,tests,__tests__,__mocks__,mocks}/**'
+  - '**/*.{md,yaml,yml,json,rst}'
   - '**/Makefile'
-  - '**/*.in'
-  - '**/*.json'
-  - '**/*.config.js'
+  - '**/*.{in,ini,lock,toml,cfg}'
+  - '**/setup.py'
+  - '**/requirements.txt'
+  - '**/.flake8'
+  - '**/.coveragerc'
+  - '**/.prettierrc.js'
+  - '**/.eslintrc.js'
+  - '**/Pipfile'
+  - '**/Dockerfile*'
+  - '**/*.{config.js,config.ts}'
   - '**/*.mk'
   - '**/*.stories.tsx'
-
-comment:
-  # add flags to `layout` configuration to show up in the PR comment
-  layout: 'reach, diff, flags, files'
+  - '**/*.{mjs,css,cjs,mts}'
 
 flag_management:
   default_rules:
     carryforward: true
-
-coverage:
-  status:
-    project:
-      default:
-        target: auto
-        threshold: 10

.github/actions/environment/complex-variables/action.yml

@@ -0,0 +1,13 @@
+name: 'Set Complex Environment Variables'
+description: Composite action using github-script to set complex environment variables.
+inputs: {}
+runs:
+  using: 'composite'
+  steps:
+    - name: 'Set complex environment variables'
+      id: set-vars
+      uses: actions/github-script@v7
+      with:
+        script: |
+          const { buildComplexEnvVars } = require(`${process.env.GITHUB_WORKSPACE}/.github/workflows/utils.js`)
+          buildComplexEnvVars(core, context)

.github/actions/git/resolve-tag/action.yml

@@ -0,0 +1,17 @@
+name: 'Fix Checkout Tags'
+description: >
+  Composite action to fix actions/checkout odd handling of tags
+  by fetching and checking out the exact tag reference.
+  See https://github.com/actions/checkout/issues/290
+inputs: {}
+runs:
+  using: 'composite'
+  steps:
+    - name: 'Fix actions/checkout odd handling of tags'
+      if: startsWith(github.ref, 'refs/tags')
+      shell: bash
+      env:
+        REF: ${{ github.ref }}
+      run: |
+        git fetch -f origin "${REF}:${REF}"
+        git checkout "${REF}"

.github/actions/js/setup/action.yml

@@ -0,0 +1,28 @@
+name: 'Setup JS Environment'
+description: >
+  Composite action to fix tag handling in checkout,
+  setup Node.js, install udev for USB detection, cache Yarn/NPM caches,
+  and perform JS setup.
+
+inputs: {}
+
+runs:
+  using: 'composite'
+  steps:
+    - uses: ./.github/actions/git/resolve-tag
+    - uses: ./.github/actions/environment/complex-variables
+    - name: 'Setup Node'
+      uses: actions/setup-node@v4
+      with:
+        node-version: '22.11.0'
+        cache: 'yarn'
+
+    - name: 'Install udev for USB-detection'
+      if: runner.os == 'Linux'
+      shell: bash
+      run: sudo apt-get update && sudo apt-get install libudev-dev
+
+    - name: 'Setup JS'
+      shell: bash
+      run: |
+        make setup-js

.github/workflows/api-test-lint-deploy.yaml

@@ -49,7 +49,7 @@ jobs:
   lint:
     name: 'opentrons package linting'
     timeout-minutes: 10
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     steps:
       - uses: 'actions/checkout@v4'
         with:
@@ -183,7 +183,7 @@ jobs:
   deploy:
     name: 'deploy opentrons package'
     needs: [test]
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     if: github.event_name == 'push'
     steps:
       - uses: 'actions/checkout@v4'

.github/workflows/app-test-build-deploy.yaml

@@ -52,7 +52,7 @@ env:
 jobs:
   js-unit-test:
     # unit tests for the app's view layer (not the node layer)
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     name: 'opentrons app frontend unit tests'
     timeout-minutes: 60
     steps:
@@ -386,7 +386,7 @@ jobs:
 
   deploy-release-app:
     name: 'Deploy built app artifacts to S3'
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     needs:
       ['js-unit-test', 'backend-unit-test', 'build-app', 'determine-build-type']
     if: contains(fromJSON(needs.determine-build-type.outputs.variants), 'release') || contains(fromJSON(needs.determine-build-type.outputs.variants), 'internal-release')

.github/workflows/components-test-build-deploy.yaml

@@ -41,7 +41,7 @@ jobs:
   js-unit-test:
     name: 'components unit tests'
     timeout-minutes: 30
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     steps:
       - uses: 'actions/checkout@v4'
       - uses: 'actions/setup-node@v4'
@@ -75,7 +75,7 @@ jobs:
 
   build-components-storybook:
     name: 'build components artifact'
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     if: github.event_name != 'pull_request'
     needs: ['js-unit-test']
     steps:
@@ -135,7 +135,7 @@ jobs:
 
   deploy-components:
     name: 'deploy components storybook artifact to S3'
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     needs:
       ['js-unit-test', 'build-components-storybook', 'determine-build-type']
     if: needs.determine-build-type.outputs.type != 'none'

.github/workflows/docs-build.yaml

@@ -38,7 +38,7 @@ defaults:
 jobs:
   build:
     name: opentrons documentation build
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     steps:
       - uses: 'actions/checkout@v4'
         with:

.github/workflows/g-code-confirm-tests.yaml

@@ -33,7 +33,7 @@ jobs:
       matrix:
         command: ['2-modules', 'swift-smoke', 'swift-turbo', 'omega', 'fast']
     name: 'Confirm G-Code (${{ matrix.command }})'
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     steps:
       - uses: 'actions/checkout@v4'
         with:

.github/workflows/g-code-testing-lint-test.yaml

@@ -40,7 +40,7 @@ defaults:
 jobs:
   lint-test:
     name: 'g-code-testing package linting and tests'
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     steps:
       - uses: 'actions/checkout@v4'
         with:

.github/workflows/http-docs-build.yaml

@@ -38,7 +38,7 @@ defaults:
 jobs:
   build:
     name: HTTP API reference build
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     steps:
       - uses: 'actions/checkout@v4'
         with:

.github/workflows/js-check.yaml

@@ -39,7 +39,7 @@ env:
 jobs:
   checks:
     name: 'js checks'
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     timeout-minutes: 20
     steps:
       - uses: 'actions/checkout@v4'

.github/workflows/ll-test-build-deploy.yaml

@@ -40,7 +40,7 @@ jobs:
   js-unit-test:
     name: 'labware library unit tests'
     timeout-minutes: 20
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     steps:
       - uses: 'actions/checkout@v4'
       - uses: 'actions/setup-node@v4'
@@ -83,7 +83,7 @@ jobs:
     name: 'labware library e2e tests'
     needs: ['js-unit-test']
     timeout-minutes: 30
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     steps:
       - uses: 'actions/checkout@v4'
       # https://github.com/actions/checkout/issues/290
@@ -123,7 +123,7 @@ jobs:
     name: 'build labware library artifact'
     needs: ['js-unit-test']
     timeout-minutes: 30
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     if: github.event_name != 'pull_request'
     steps:
       - uses: 'actions/checkout@v4'
@@ -170,7 +170,7 @@ jobs:
           path: labware-library/dist
   deploy-ll:
     name: 'deploy LL artifact to S3'
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     needs: ['js-unit-test', 'e2e-test', 'build-ll']
     if: github.event_name != 'pull_request'
     steps:

.github/workflows/opentrons-ai-client-staging-continuous-deploy.yaml

@@ -16,7 +16,7 @@ env:
 
 jobs:
   js-unit-test:
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     permissions:
       id-token: write
       contents: read
@@ -53,8 +53,8 @@ jobs:
           make setup-js
       - name: 'build'
         env:
-            # inject dev id since this is for staging
-            OT_AI_CLIENT_MIXPANEL_ID: ${{ secrets.OT_AI_CLIENT_MIXPANEL_DEV_ID }}
+          # inject dev id since this is for staging
+          OT_AI_CLIENT_MIXPANEL_ID: ${{ secrets.OT_AI_CLIENT_MIXPANEL_DEV_ID }}
         run: |
           make -C opentrons-ai-client build-staging
       - name: Configure AWS Credentials

.github/workflows/opentrons-ai-client-test.yaml

@@ -35,7 +35,7 @@ env:
 
 jobs:
   js-unit-test:
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     name: 'opentrons ai frontend unit tests'
     timeout-minutes: 60
     steps:

.github/workflows/opentrons-ai-production-deploy.yaml

@@ -16,7 +16,7 @@ jobs:
     concurrency:
       group: ${{ github.workflow }}-ai-client@
       cancel-in-progress: true
-    runs-on: 'ubuntu-22.04'
+    runs-on: 'ubuntu-24.04'
     permissions:
       id-token: write
       contents: read
@@ -53,7 +53,7 @@ jobs:
           make setup-js
       - name: 'build'
         env:
-              OT_AI_CLIENT_MIXPANEL_ID: ${{ secrets.OT_AI_CLIENT_MIXPANEL_ID }}
+          OT_AI_CLIENT_MIXPANEL_ID: ${{ secrets.OT_AI_CLIENT_MIXPANEL_ID }}
         run: |
           make -C opentrons-ai-client build-production
       - name: Configure AWS Credentials