Merge branch 'edge' into app_lpc-store-handle-labware

Author: mjhuff

api-client/src/maintenance_runs/types.ts

@@ -6,7 +6,7 @@ import type {
 } from '@opentrons/shared-data'
 import type {
   RunCommandSummary,
-  LabwareOffsetCreateData,
+  LegacyLabwareOffsetCreateData,
   RunStatus,
   RunAction,
 } from '../runs'
@@ -42,7 +42,7 @@ export interface MaintenanceRunError {
 }
 
 export interface CreateMaintenanceRunData {
-  labwareOffsets?: LabwareOffsetCreateData[]
+  labwareOffsets?: LegacyLabwareOffsetCreateData[]
 }
 
 export interface LabwareDefinitionSummary {

api-client/src/modules/api-types.ts

@@ -10,6 +10,7 @@ interface PhysicalPort {
   port: number
   hub: boolean
   portGroup: PortGroup
+  hubPort?: number
 }
 
 type ModuleOffsetSource =

api-client/src/runs/createLabwareOffset.ts

@@ -2,14 +2,14 @@ import { POST, request } from '../request'
 
 import type { ResponsePromise } from '../request'
 import type { HostConfig } from '../types'
-import type { LabwareOffsetCreateData, Run } from './types'
+import type { LegacyLabwareOffsetCreateData, Run } from './types'
 
 export function createLabwareOffset(
   config: HostConfig,
   runId: string,
-  data: LabwareOffsetCreateData
+  data: LegacyLabwareOffsetCreateData
 ): ResponsePromise<Run> {
-  return request<Run, { data: LabwareOffsetCreateData }>(
+  return request<Run, { data: LegacyLabwareOffsetCreateData }>(
     POST,
     `/runs/${runId}/labware_offsets`,
     { data },

api-client/src/runs/createRun.ts

@@ -4,14 +4,14 @@ import type { ResponsePromise } from '../request'
 import type { HostConfig } from '../types'
 import type {
   Run,
-  LabwareOffsetCreateData,
+  LegacyLabwareOffsetCreateData,
   RunTimeParameterValuesCreateData,
   RunTimeParameterFilesCreateData,
 } from './types'
 
 export interface CreateRunData {
   protocolId?: string
-  labwareOffsets?: LabwareOffsetCreateData[]
+  labwareOffsets?: LegacyLabwareOffsetCreateData[]
   runTimeParameterValues?: RunTimeParameterValuesCreateData
   runTimeParameterFiles?: RunTimeParameterFilesCreateData
 }

api-client/src/runs/types.ts

@@ -85,7 +85,8 @@ export interface LabwareOffset {
   id: string
   createdAt: string
   definitionUri: string
-  location: LabwareOffsetLocation
+  location: LegacyLabwareOffsetLocation
+  locationSequence?: LabwareOffsetLocationSequence
   vector: VectorOffset
 }
 
@@ -156,14 +157,35 @@ export interface CreateRunActionData {
   actionType: RunActionType
 }
 
-export interface LabwareOffsetLocation {
+export interface OnAddressableAreaLabwareOffsetLocationSequenceComponent {
+  kind: 'onAddressableArea'
+  labware: string
+}
+
+export interface OnModuleOffsetLocationSequenceComponent {
+  kind: 'onModule'
+  moduleModel: ModuleModel
+}
+
+export interface OnLabwareOffsetLocationSequenceComponent {
+  kind: 'onLabware'
+  labwareUri: string
+}
+
+export type LabwareOffsetLocationSequenceComponent =
+  | OnAddressableAreaLabwareOffsetLocationSequenceComponent
+  | OnModuleOffsetLocationSequenceComponent
+  | OnLabwareOffsetLocationSequenceComponent
+export type LabwareOffsetLocationSequence = LabwareOffsetLocationSequenceComponent[]
+
+export interface LegacyLabwareOffsetLocation {
   slotName: string
   moduleModel?: ModuleModel
   definitionUri?: string
 }
-export interface LabwareOffsetCreateData {
+export interface LegacyLabwareOffsetCreateData {
   definitionUri: string
-  location: LabwareOffsetLocation
+  location: LegacyLabwareOffsetLocation
   vector: VectorOffset
 }
 

api/docs/v1/pipettes.rst

@@ -55,12 +55,12 @@ same behavior as before.
 The P20 Single GEN2 is back-compatible with the P10 Single in this regard. If your protocol
 specifies an ``instruments.P10_Single`` and your robot has an ``instruments.P20_Single_GEN2``
 attached, you can run your protocol, and the robot will act as if the maximum volume of the P20
-Single GEN2 is 10 μl.
+Single GEN2 is 10 µl.
 
 If you have a P50 Single specified in your protocol, there is no automatic backwards compatibility.
 If you want to use a Gen2 Pipette, you must change your protocol to load either a P300 Single GEN2
-(if you are using volumes between 20 and 50 μl) or a P20 Single GEN2 (if you are using volumes
-below 20 μl).
+(if you are using volumes between 20 and 50 µl) or a P20 Single GEN2 (if you are using volumes
+below 20 µl).
 
 
 Plunger Flow Rates
@@ -99,92 +99,92 @@ The given defaults for every pipette model is the following:
 P10_Single
 ----------
 
-- Aspirate Default: 5 μl/s
-- Dispense Default: 10 μl/s
-- Blow Out Default: 1000 μl/s
-- Minimum Volume: 1 μl
-- Maximum Volume: 10 μl
+- Aspirate Default: 5 µl/s
+- Dispense Default: 10 µl/s
+- Blow Out Default: 1000 µl/s
+- Minimum Volume: 1 µl
+- Maximum Volume: 10 µl
 
 P10_Multi
 ---------
 
-- Aspirate Default: 5 μl/s
-- Dispense Default: 10 μl/s
-- Blow Out Default: 1000 μl/s
-- Minimum Volume: 1 μl
-- Maximum Volume: 10 μl
+- Aspirate Default: 5 µl/s
+- Dispense Default: 10 µl/s
+- Blow Out Default: 1000 µl/s
+- Minimum Volume: 1 µl
+- Maximum Volume: 10 µl
 
 P50_Single
 ----------
 
-- Aspirate Default: 25 μl/s
-- Dispense Default: 50 μl/s
-- Blow Out Default: 1000 μl/s
-- Minimum Volume: 5 μl
-- Maximum Volume: 50 μl
+- Aspirate Default: 25 µl/s
+- Dispense Default: 50 µl/s
+- Blow Out Default: 1000 µl/s
+- Minimum Volume: 5 µl
+- Maximum Volume: 50 µl
 
 P50_Multi
 ---------
 
-- Aspirate Default: 25 μl/s
-- Dispense Default: 50 μl/s
-- Blow Out Default: 1000 μl/s
-- Minimum Volume: 5 μl
-- Maximum Volume: 50 μl
+- Aspirate Default: 25 µl/s
+- Dispense Default: 50 µl/s
+- Blow Out Default: 1000 µl/s
+- Minimum Volume: 5 µl
+- Maximum Volume: 50 µl
 
 P300_Single
 -----------
 
-- Aspirate Default: 150 μl/s
-- Dispense Default: 300 μl/s
-- Blow Out Default: 1000 μl/s
-- Minimum Volume: 30 μl
-- Maximum Volume: 300 μl
+- Aspirate Default: 150 µl/s
+- Dispense Default: 300 µl/s
+- Blow Out Default: 1000 µl/s
+- Minimum Volume: 30 µl
+- Maximum Volume: 300 µl
 
 P300_Multi
 ----------
 
-- Aspirate Default: 150 μl/s
-- Dispense Default: 300 μl/s
-- Blow Out Default: 1000 μl/s
-- Minimum Volume: 30 μl
-- Maximum Volume: 300 μl
+- Aspirate Default: 150 µl/s
+- Dispense Default: 300 µl/s
+- Blow Out Default: 1000 µl/s
+- Minimum Volume: 30 µl
+- Maximum Volume: 300 µl
 
 P1000_Single
 ------------
 
-- Aspirate Default: 500 μl/s
-- Dispense Default: 1000 μl/s
-- Blow Out Default: 1000 μl/s
-- Minimum Volume: 100 μl
-- Maximum Volume: 1000 μl
+- Aspirate Default: 500 µl/s
+- Dispense Default: 1000 µl/s
+- Blow Out Default: 1000 µl/s
+- Minimum Volume: 100 µl
+- Maximum Volume: 1000 µl
 
 P20_Single_GEN2
 ---------------
 
-- Aspirate Default: 3.78 μl/s
-- Dispense Default: 3.78 μl/s
-- Blow Out Default: 3.78 μl/s
-- Minimum Volume: 1 μl
-- Maximum Volume: 20 μl
+- Aspirate Default: 3.78 µl/s
+- Dispense Default: 3.78 µl/s
+- Blow Out Default: 3.78 µl/s
+- Minimum Volume: 1 µl
+- Maximum Volume: 20 µl
 
 P300_Single_GEN2
 ----------------
 
-- Aspirate Default: 46.43 μl/s
-- Dispense Default: 46.43 μl/s
-- Blow Out Default: 46.43 μl/s
-- Minimum Volume: 20 μl
-- Maximum Volume: 300 μl
+- Aspirate Default: 46.43 µl/s
+- Dispense Default: 46.43 µl/s
+- Blow Out Default: 46.43 µl/s
+- Minimum Volume: 20 µl
+- Maximum Volume: 300 µl
 
 P1000_Single_GEN2
 -----------------
 
-- Aspirate Default: 137.35 μl/s
-- Dispense Default: 137.35 μl/s
-- Blow Out Default: 137.35 μl/s
-- Minimum Volume: 100 μl
-- Maximum Volume: 1000 μl
+- Aspirate Default: 137.35 µl/s
+- Dispense Default: 137.35 µl/s
+- Blow Out Default: 137.35 µl/s
+- Minimum Volume: 100 µl
+- Maximum Volume: 1000 µl
 
 Old Pipette Constructor
 =======================

api/docs/v2/complex_commands/parameters.rst

@@ -62,7 +62,7 @@ One reason to set ``new_tip="always"`` is to avoid cross-contamination between w
 
 :py:meth:`~.InstrumentContext.transfer` will pick up a new tip before *every* aspirate when ``new_tip="always"``. This includes when :ref:`tip refilling <complex-tip-refilling>` requires multiple aspirations from a single source well.
 
-:py:meth:`~.InstrumentContext.distribute` and :py:meth:`~.InstrumentContext.consolidate` only pick up one tip, even when ``new_tip="always"``. For example, this distribute command returns to the source well a second time, because the amount to be distributed (400 µL total plus disposal volume) exceeds the pipette capacity (300 μL)::
+:py:meth:`~.InstrumentContext.distribute` and :py:meth:`~.InstrumentContext.consolidate` only pick up one tip, even when ``new_tip="always"``. For example, this distribute command returns to the source well a second time, because the amount to be distributed (400 µL total plus disposal volume) exceeds the pipette capacity (300 µL)::
 
     pipette.distribute(
         volume=200,

api/docs/v2/conf.py

@@ -445,6 +445,10 @@
     ("py:class", r".*protocol_api\.config.*"),
     ("py:class", r".*opentrons_shared_data.*"),
     ("py:class", r".*protocol_api._parameters.Parameters.*"),
-	("py:class", r".*RobotContext"),  # shh it's a secret (for now)
-    ("py:class", r'.*AbstractLabware|APIVersion|LabwareLike|LoadedCoreMap|ModuleTypes|NoneType|OffDeckType|ProtocolCore|WellCore'),  # laundry list of not fully qualified things
+    ("py:class", r".*RobotContext"),  # shh it's a secret (for now)
+    ("py:class", r".*FlexStackerContext"),  # ssh it's a secret (for now)
+    (
+        "py:class",
+        r".*AbstractLabware|APIVersion|LabwareLike|LoadedCoreMap|ModuleTypes|NoneType|OffDeckType|ProtocolCore|WellCore",
+    ),  # laundry list of not fully qualified things
 ]

api/docs/v2/modules/temperature_module.rst

@@ -98,11 +98,11 @@ The Temperature Module supports these 96-well block and labware combinations for
 
    * - 96-well block contents
      - API Load Name
-   * - Bio-Rad well plate 200 μL
+   * - Bio-Rad well plate 200 µL
      - ``opentrons_96_aluminumblock_biorad_wellplate_200uL``
-   * - Generic PCR strip 200 μL
+   * - Generic PCR strip 200 µL
      - ``opentrons_96_aluminumblock_generic_pcr_strip_200uL``
-   * - NEST well plate 100 μL
+   * - NEST well plate 100 µL
      - ``opentrons_96_aluminumblock_nest_wellplate_100uL``
 
 This command loads the same physical adapter and labware as the example in the Standalone Adapters section above, but it is also compatible with earlier API versions::

api/docs/v2/pipettes/characteristics.rst

@@ -184,29 +184,32 @@ These flow rates will remain in effect until you change the ``flow_rate`` attrib
 Flex Pipette Flow Rates
 -----------------------
 
-Flex pipette flow rates depend on pipette volume and tip capacity. Each pipette–tip combination has a default flow rate for aspirating, dispensing, and blowing out liquid. When using a 50 µL pipette, you should only use 50 µL tips.
-
-.. list-table::
-    :header-rows: 1
-    
-    * - Pipette Model
-      - Tip Capacity (µL)
-      - Flow Rate (µL/s)
-    * - 50 µL (1- and 8-channel)
-      - 50
-      - 57
-    * - 1000 µL (1-, 8-, and 96-channel)
-      - 50
-      - 478
-    * - 1000 µL (1-, 8-, and 96-channel)
-      - 200
-      - 716
-    * - 1000 µL (1-, 8-, and 96-channel)
-      - 1000
-      - 716
-
-
-Additionally, all Flex pipettes have a well bottom clearance of 1 mm for aspirate and dispense actions.
+The following table provides data on the default aspirate, dispense, and blowout flow rates (in µL/s) for Flex pipettes. Default flow rates for each pipette-tip combination are the same across all three actions.
+
+.. Excludes low-vol 96 channel. Not yet released.
+
++-----------------------------+-------------------+------------------------+
+| Pipette Model               | Tip Capacity (µL) | Default Flow Rate (µL) |
++=============================+===================+========================+
+| 1- and 8-channel (50 µL)    | 50                | 35                     |
++-----------------------------+-------------------+------------------------+
+| 1- and 8-channel (1000 µL)  | 50                | 478                    |
++                             +-------------------+------------------------+
+|                             | 200               | 716                    |
++                             +-------------------+------------------------+
+|                             | 1000              | 716                    |
++-----------------------------+-------------------+------------------------+
+| 96-channel (5-1000 µL)      | 50                | 6                      |
++                             +-------------------+------------------------+
+|                             | 200               | 80                     |
++                             +-------------------+------------------------+
+|                             | 1000              | 160                    |
++-----------------------------+-------------------+------------------------+
+
+Additionally:
+
+- When using a 50 µL pipette, you should only use 50 µL tips.
+- All Flex pipettes have a well bottom clearance of 1 mm for aspirate and dispense actions.
 
 .. _ot2-flow-rates: