The repository contains code and scripts used to generate and analyse data for the superTranscript/Lace paper.
- Scripts used in the chicken superTranscript analysis
- R scripts for Gviz
- human superTranscriptome, its annotation and the scripts used to create them
- mouse superTranscriptome, its annotation and the scripts used to create them
- bash and R scripts for the differential isoform usgae comparison
- code used for variant calling on superTranscripts