added some extra steps to the README to make some details clearer, based on samson's feedback

Author: jesslourenco

README.md

@@ -1,63 +1,73 @@
 # cybergator
+
 CyberGator: A Dynamic Framework for Cyber Resilience Assessment
 
 ## Project Overview
+
 CyberGator is a cyber resilience assessment framework designed for dynamic risk evaluation, attack simulation, and adaptive defense strategy generation. It integrates Flask, Plotly Dash, Neo4j, PostgreSQL (via Supabase), and AI-driven simulations to model and improve system resilience against Advanced Persistent Threats (APTs).
 
 ---
+
 ## Pre-requisites
+
 - **[Docker](https://www.docker.com/get-started)**
 - **[Docker Compose](https://docs.docker.com/compose/install/)**
 - **[Python >= 3.12](https://www.datacamp.com/blog/how-to-install-python)**
 - **[Poetry](https://python-poetry.org/docs/#installation)**
 
 Verify installations:
-    
+
     `docker --version`
 
     `poetry --version`
 
---- 
+---
+
 ## Running the Application (Development)
 
 1. Clone the Repository
+
 ```
-git clone https://github.com/your-org/cybergator.git
+git clone git@github.com:OzPol/cybergator.git 
 cd cybergator
 ```
 
 2. Create your .env file
 Your .env file should be placed in the root of the project (same level as the Dockerfile)
 
-2. Build the container
+3. Make sure your Docker desktop is running! :)
+
+4. Build the container
 
 ```
 docker-compose build
 ```
 
-3. Run the container
+5. Run the container
 
 ```
 docker-compose up
 ```
 
-4. Check the homepage in the browser
+6. Check the homepage in the browser
 
 ```
 http://localhost:8000
 ```
 
-5. When you are done, you can stop the container
+7. When you are done, you can stop the container
 
 ```
 docker-compose down
 ```
 
 ### Important Notes
+
 - In general, you only need to rebuild the container when there are changes to dependencies.
 - It's recommended to install dependencies INSIDE the container to avoid issues. Your local `poetry.lock` and `pyproject.toml` files will be automatically updated :) You can find detailed instructions for this in the next section.
 
 ## How to add and install new depencies to the application
+
 1. Run the container in detached mode:
 
 ```
@@ -81,4 +91,3 @@ docker-compose up --build
 ```
 docker image prune -f
 ```
-