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1 parent d963841 commit bd88453Copy full SHA for bd88453
deeprvat/annotations/annotations.py
@@ -2115,7 +2115,9 @@ def aggregate_and_concat_absplice(
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logger.info(f"Reading file {chrom_file}")
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# ab_splice_res = pd.read_parquet(abs_splice_res_dir/ chrom_file).reset_index()
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ab_splice_res = pd.read_table(abs_splice_res_dir / chrom_file).reset_index()
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- absplice_columns = [j for j in ab_splice_res.columns if "AbSplice_DNA_" in j]
+ absplice_columns = [
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+ j for j in ab_splice_res.columns if "AbSplice_DNA_" in j
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+ ]
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#### aggregate tissue specific ab splice scores
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ab_splice_res["AbSplice_DNA"] = np.max(
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ab_splice_res[absplice_columns],
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