bump: Update Mitorsaw to v0.2.4 (#256)

williamrowell · web-flow · commit 33ed17c8bcf6 · 2025-09-04T12:54:09.000-04:00
* bump: Update Mitorsaw to v0.2.4
diff --git a/docs/tools_containers.md b/docs/tools_containers.md
@@ -16,7 +16,7 @@ We directly use `deepvariant`, `deepvariant-gpu`, `pharmcat`, and `glnexus` cont
 | sawfish | <ul><li>sawfish 2.0.4</li><li>sawshark 0.3.0</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/89365e2597635ffbe53870693ec2e047973d0724/docker/sawfish) | [sawfish@sha256:842fcae0ebaf2ab060f1d24512dccd45f9c30d49a609794dfdc4693b4e88dec2](https://quay.io/repository/pacbio/sawfish/manifest/sha256:842fcae0ebaf2ab060f1d24512dccd45f9c30d49a609794dfdc4693b4e88dec2) |
 | trgt | <ul><li>trgt 4.0.0</li><li>`/opt/scripts/check_trgt_coverage.py` 0.1.0</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/c5614951abe48eab926a5246ffb843b4f7816d47/docker/trgt) | [trgt@sha256:7511072d0f57396b1b99c7e0c08934db417138b6b4ce5d93c4974115faab2a0d](https://quay.io/repository/pacbio/trgt/manifest/sha256:7511072d0f57396b1b99c7e0c08934db417138b6b4ce5d93c4974115faab2a0d) |
 | hiphase | <ul><li>hiphase 1.5.0</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/69039c010ada793bab4d38a9bd17a30562b9b671/docker/hiphase) | [hiphase@sha256:353b4ffdae4281bdd5daf5a73ea3bb26ea742ef2c36e9980cb1f1ed524a07482](https://quay.io/repository/pacbio/hiphase/manifest/sha256:353b4ffdae4281bdd5daf5a73ea3bb26ea742ef2c36e9980cb1f1ed524a07482) |
-| mitorsaw | <ul><li>mitorsaw 0.2.3</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/dd6d0b7c3953211ee0ea074283f42329998aeff7/docker/mitorsaw) | [mitorsaw@sha256:4a1eac52a6ae80b7ccfb0ad3809f5f34a69c7ed859541e097e36d73623e8ad0e](https://quay.io/repository/pacbio/mitorsaw/manifest/sha256:4a1eac52a6ae80b7ccfb0ad3809f5f34a69c7ed859541e097e36d73623e8ad0e) |
+| mitorsaw | <ul><li>mitorsaw 0.2.4</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/6f6cf280c8ac0b76dd1d08bd830347b0b8ca9cea/docker/mitorsaw) | [mitorsaw@sha256:d0e47fb84e6e962f01a754d1052a24e550694646c0d4afb056c0e3fd7ace7a0d](https://quay.io/repository/pacbio/mitorsaw/manifest/sha256:d0e47fb84e6e962f01a754d1052a24e550694646c0d4afb056c0e3fd7ace7a0d) |
 | paraphase | <ul><li>paraphase 3.3.4</li><li>minimap 2.28</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/43214f6ed8caa835a98f5a0ee79329048252e857/docker/paraphase) | [paraphase@sha256:21dba4e381bf860dc38aa4833a6b97baae4566163e7da3101f07bea42fc42b9e](https://quay.io/repository/pacbio/paraphase/manifest/sha256:21dba4e381bf860dc38aa4833a6b97baae4566163e7da3101f07bea42fc42b9e) |
 | pbstarphase | <ul><li>pbstarphase 1.4.1</li><li>Database 20250515</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/c5166b28e43f36a381450ba479e2e34a841bb922/docker/pbstarphase) | [pbstarphase@sha256:7daaad3b617a3b8b5914ab0893ee7cc545fd2025a35619211a5b8e25e4c36ac4](https://quay.io/repository/pacbio/pbstarphase/manifest/sha256:7daaad3b617a3b8b5914ab0893ee7cc545fd2025a35619211a5b8e25e4c36ac4) |
 | pb-cpg-tools | <ul><li>pb-cpg-tools 3.0.0</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/330b99b79f32b2d2598e812779f3c64460739e6c/docker/pb-cpg-tools) | [pb-cpg-tools@sha256:afd5468a423fe089f1437d525fdc19c704296f723958739a6fe226caa01fba1c](https://quay.io/repository/pacbio/pb-cpg-tools/manifest/sha256:afd5468a423fe089f1437d525fdc19c704296f723958739a6fe226caa01fba1c) |
diff --git a/image_manifest.txt b/image_manifest.txt
@@ -1,7 +1,7 @@
 quay.io/pacbio/glnexus@sha256:ce6fecf59dddc6089a8100b31c29c1e6ed50a0cf123da9f2bc589ee4b0c69c8e
 quay.io/pacbio/hiphase@sha256:353b4ffdae4281bdd5daf5a73ea3bb26ea742ef2c36e9980cb1f1ed524a07482
 quay.io/pacbio/methbat@sha256:54a74389cf8ac485e8f34522d48e05880c01245e9aaf4dec6a6eddf25ee2c550
-quay.io/pacbio/mitorsaw@sha256:4a1eac52a6ae80b7ccfb0ad3809f5f34a69c7ed859541e097e36d73623e8ad0e
+quay.io/pacbio/mitorsaw@sha256:d0e47fb84e6e962f01a754d1052a24e550694646c0d4afb056c0e3fd7ace7a0d
 quay.io/pacbio/mosdepth@sha256:63f7a5d1a4a17b71e66d755d3301a951e50f6b63777d34dab3ee9e182fd7acb1
 quay.io/pacbio/paraphase@sha256:21dba4e381bf860dc38aa4833a6b97baae4566163e7da3101f07bea42fc42b9e
 quay.io/pacbio/pb-cpg-tools@sha256:afd5468a423fe089f1437d525fdc19c704296f723958739a6fe226caa01fba1c
diff --git a/wdl-ci.config.json b/wdl-ci.config.json
@@ -1287,7 +1287,7 @@
       "tasks": {
         "mitorsaw": {
           "key": "mitorsaw",
-          "digest": "vzdinv7ullc2eobkrznr47mtjchvzuv4",
+          "digest": "qpi7ncm3hbylrt2ywex4qmjdpfewm3zk",
           "tests": [
             {
               "inputs": {
diff --git a/workflows/wdl-common b/workflows/wdl-common
@@ -1 +1 @@
-Subproject commit ac299c63fcf4e2c49e58d9eb1a2b1f40380d1775
+Subproject commit 7da5aa6a54d5225da9f459aaeae7d5a768ff2712

Original file line number	Diff line number	Diff line change
`@@ -1287,7 +1287,7 @@`
`1287`	`1287`	`"tasks": {`
`1288`	`1288`	`"mitorsaw": {`
`1289`	`1289`	`"key": "mitorsaw",`
`1290`		`- "digest": "vzdinv7ullc2eobkrznr47mtjchvzuv4",`
	`1290`	`+ "digest": "qpi7ncm3hbylrt2ywex4qmjdpfewm3zk",`
`1291`	`1291`	`"tests": [`
`1292`	`1292`	`{`
`1293`	`1293`	`"inputs": {`