diff --git a/paraviewer/process_paraphase.py b/paraviewer/process_paraphase.py index aec8dcc..e997fca 100644 --- a/paraviewer/process_paraphase.py +++ b/paraviewer/process_paraphase.py @@ -145,7 +145,7 @@ def make_trio_table_entries( ) image_path = path.join( IMAGES_PATH.format(sample=trio.IndividualID + "-trio"), - f"{trio.IndividualID + "-trio"}_{region}.png", + f"{trio.IndividualID + '-trio'}_{region}.png", ) trio_entries.append( diff --git a/readme.md b/readme.md index a176fd4..e89b3b5 100644 --- a/readme.md +++ b/readme.md @@ -27,8 +27,11 @@ If an experiment is run with trios present and annotated via a pedigree file, th ### Demos Want to try out the websites from Paraviewer? We've prepared two demo sites: -* [WGS Demo](https://pacificbiosciences.github.io/ParaviewerWGSDemo): 22 samples from the Platinum Pedigree cohort. 5 regions are included ([GBA](https://github.com/PacificBiosciences/paraphase/blob/main/docs/GBA.md), [NEB](https://github.com/PacificBiosciences/paraphase/blob/main/docs/NEB.md), [PMS2](https://github.com/PacificBiosciences/paraphase/blob/main/docs/PMS2.md), [RCCX](https://github.com/PacificBiosciences/paraphase/blob/main/docs/RCCX.md), [SMN1](https://github.com/PacificBiosciences/paraphase/blob/main/docs/SMN1_SMN2.md)) -* [PureTarget Carrier Panel Demo](https://pacificbiosciences.github.io/ParaviewerPTCPDemo): 19 [PureTarget Carrier Panel](https://www.pacb.com/wp-content/uploads/Application-note-Consolidate-challenging-genes-with-PureTarget-carrier-screen-panel.pdf) samples from Coriell with variants in the CYP21 (part of RCCX) or SMN regions. +* [WGS Demo](https://pacificbiosciences.github.io/ParaviewerWGSDemo): + * 22 samples from the Platinum Pedigree cohort. + * 5 regions are included ([GBA](https://github.com/PacificBiosciences/paraphase/blob/main/docs/GBA.md), [NEB](https://github.com/PacificBiosciences/paraphase/blob/main/docs/NEB.md), [PMS2](https://github.com/PacificBiosciences/paraphase/blob/main/docs/PMS2.md), [RCCX](https://github.com/PacificBiosciences/paraphase/blob/main/docs/RCCX.md), [SMN1](https://github.com/PacificBiosciences/paraphase/blob/main/docs/SMN1_SMN2.md)) +* [PureTarget Carrier Panel Demo](https://pacificbiosciences.github.io/ParaviewerPTCPDemo): + * 19 [PureTarget Carrier Panel](https://www.pacb.com/wp-content/uploads/Application-note-Consolidate-challenging-genes-with-PureTarget-carrier-screen-panel.pdf) samples from Coriell with variants in the CYP21 (part of RCCX) or SMN regions. #### Firefox note: Issues may be encountered in Firefox when loading these demo sites. We recommend the Chrome browser.