When I accidentally passed the wrong BED file to trgt genotype, it completed successfully after outputting an error message for every locus like
....
[ERROR] - Locus processing: Error at BED line 9: Expected 4 fields in the format 'chrom start end info', found 5: chr1 52256 52303
...
I think it would be more intuitive if it ran the validate subcommand internally before starting to genotype.
When I accidentally passed the wrong BED file to
trgt genotype, it completed successfully after outputting an error message for every locus likeI think it would be more intuitive if it ran the validate subcommand internally before starting to genotype.