sequence-to-function/pyproject.toml at main · PandaMia/sequence-to-function · GitHub

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[project]
name = "sequence-to-function"
version = "0.1.0"
description = "An agent-based system for generating a knowledge base from all publicly available sources regarding the relationships between protein sequences and their functions"
readme = "README.md"
requires-python = ">=3.12"
dependencies = [
    "openai-agents[litellm]==0.14.1",
    "openai[aiohttp]==2.32.0",
    "fastapi",
    "uvicorn[standard]",
    "requests",
    "beautifulsoup4",
    "pydantic",
    "aiosqlite",
    "sqlalchemy[asyncio]",
    "aiohttp",
    "pandas",
    "mygene",
    "python-dotenv",
    "cryptography",
]

[project.optional-dependencies]
dev = [
    "pytest",
    "pytest-asyncio",
    "httpx",
]

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[tool.uv]
dev-dependencies = []

[tool.hatch.build.targets.wheel]
packages = ["stf_agents", "configs", "utils", "runner"]