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| 1 | +name: HDF5 and MPICH |
| 2 | + |
| 3 | +on: |
| 4 | + push: |
| 5 | + branches: [ master ] |
| 6 | + paths-ignore: |
| 7 | + - '**/*.md' |
| 8 | + - '**/*.txt' |
| 9 | + - '**/*.jpg' |
| 10 | + - '**/*.png' |
| 11 | + - 'tests/*' |
| 12 | + pull_request: |
| 13 | + branches: [ master ] |
| 14 | + paths-ignore: |
| 15 | + - '**/*.md' |
| 16 | + - '**/*.txt' |
| 17 | + - '**/*.jpg' |
| 18 | + - '**/*.png' |
| 19 | + - 'tests/*' |
| 20 | + |
| 21 | +env: |
| 22 | + MPICH_VERSION: 4.3.0 |
| 23 | + HDF5_VERSION: 1.14.6 |
| 24 | + |
| 25 | +jobs: |
| 26 | + build: |
| 27 | + runs-on: ubuntu-latest |
| 28 | + timeout-minutes: 60 |
| 29 | + steps: |
| 30 | + - uses: actions/checkout@v4 |
| 31 | + - name: Set up dependencies |
| 32 | + run: | |
| 33 | + set -x |
| 34 | + sudo apt-get update |
| 35 | + sudo apt-get -y install automake autoconf libtool libtool-bin m4 cmake |
| 36 | + # The MPICH installed on github actions is too slow |
| 37 | + # sudo apt-get install mpich |
| 38 | + # mpicc -v |
| 39 | + # zlib |
| 40 | + sudo apt-get -y install zlib1g-dev |
| 41 | + - name: Add global env variables into GITHUB_ENV |
| 42 | + run: | |
| 43 | + set -x |
| 44 | + echo "MPICH_DIR=${GITHUB_WORKSPACE}/MPICH" >> $GITHUB_ENV |
| 45 | + echo "HDF5_ROOT=${GITHUB_WORKSPACE}/HDF5" >> $GITHUB_ENV |
| 46 | + - name: Build MPICH ${{ env.MPICH_VERSION }} |
| 47 | + if: ${{ success() }} |
| 48 | + run: | |
| 49 | + set -x |
| 50 | + cd ${GITHUB_WORKSPACE} |
| 51 | + rm -rf ${MPICH_DIR} ; mkdir ${MPICH_DIR} ; cd ${MPICH_DIR} |
| 52 | + curl -LO https://www.mpich.org/static/downloads/${MPICH_VERSION}/mpich-${MPICH_VERSION}.tar.gz |
| 53 | + gzip -dc mpich-${MPICH_VERSION}.tar.gz | tar -xf - |
| 54 | + cd mpich-${MPICH_VERSION} |
| 55 | + ./configure --prefix=${MPICH_DIR} \ |
| 56 | + --silent \ |
| 57 | + --enable-romio \ |
| 58 | + --with-file-system=ufs \ |
| 59 | + --with-device=ch3:sock \ |
| 60 | + --disable-fortran \ |
| 61 | + CC=gcc |
| 62 | + make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1 |
| 63 | + make -s -j 8 distclean >> qout 2>&1 |
| 64 | + - name: Dump MPICH log file |
| 65 | + if: ${{ failure() }} |
| 66 | + run: | |
| 67 | + set -x |
| 68 | + cat ${MPICH_DIR}/mpich-${MPICH_VERSION}/qout |
| 69 | + cat ${MPICH_DIR}/mpich-${MPICH_VERSION}/config.log |
| 70 | + - name: Install HDF5 ${{ env.HDF5_VERSION }} |
| 71 | + if: ${{ success() }} |
| 72 | + run: | |
| 73 | + set -x |
| 74 | + cd ${GITHUB_WORKSPACE} |
| 75 | + rm -rf ${HDF5_ROOT} ; mkdir ${HDF5_ROOT} ; cd ${HDF5_ROOT} |
| 76 | + VER_MAJOR=${HDF5_VERSION%.*} |
| 77 | + VER_MAJOR=${VER_MAJOR/./_} # replace . with _ |
| 78 | + VER_NOPATCH=${HDF5_VERSION%-*} # remove patch version |
| 79 | + VER_NOPATCH=${VER_NOPATCH//./_} |
| 80 | + # curl -LO https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${VER_MAJOR}/hdf5-${VER_NOPATCH}/src/hdf5-${HDF5_VERSION}.tar.gz |
| 81 | + curl -LO https://support.hdfgroup.org/releases/hdf5/v${VER_MAJOR}/v${VER_NOPATCH}/downloads/hdf5-${HDF5_VERSION}.tar.gz |
| 82 | + tar -zxf hdf5-${HDF5_VERSION}.tar.gz |
| 83 | + cd hdf5-${HDF5_VERSION} |
| 84 | + ./configure --prefix=${HDF5_ROOT} \ |
| 85 | + --silent \ |
| 86 | + --enable-parallel \ |
| 87 | + --enable-build-mode=production \ |
| 88 | + --enable-unsupported \ |
| 89 | + --enable-threadsafe \ |
| 90 | + --disable-doxygen-doc \ |
| 91 | + --disable-doxygen-man \ |
| 92 | + --disable-doxygen-html \ |
| 93 | + --disable-tests \ |
| 94 | + --disable-fortran \ |
| 95 | + --disable-cxx \ |
| 96 | + CC=${MPICH_DIR}/bin/mpicc |
| 97 | + make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1 |
| 98 | + make -s -j 8 distclean >> qout 2>&1 |
| 99 | + - name: Dump config.log file if build HDF5 failed |
| 100 | + if: ${{ failure() }} |
| 101 | + run: | |
| 102 | + set -x |
| 103 | + cd ${GITHUB_WORKSPACE} |
| 104 | + cat ${HDF5_ROOT}/hdf5-${HDF5_VERSION}/qout |
| 105 | + cat ${HDF5_ROOT}/hdf5-${HDF5_VERSION}/config.log |
| 106 | + - name: Build E3SM_IO with HDF5 |
| 107 | + if: ${{ success() }} |
| 108 | + run: | |
| 109 | + set -x |
| 110 | + cd ${GITHUB_WORKSPACE} |
| 111 | + rm -rf ./test_output |
| 112 | + autoreconf -i |
| 113 | + ./configure --with-mpi=${MPICH_DIR} \ |
| 114 | + --with-hdf5=${HDF5_ROOT} \ |
| 115 | + CFLAGS=-fno-var-tracking-assignments \ |
| 116 | + CXXFLAGS=-fno-var-tracking-assignments |
| 117 | + make -j 8 |
| 118 | + - name: Print config.log if error |
| 119 | + if: ${{ failure() }} |
| 120 | + run: | |
| 121 | + set -x |
| 122 | + cat ${GITHUB_WORKSPACE}/config.log |
| 123 | + - name: Test - make check |
| 124 | + if: ${{ success() }} |
| 125 | + run: | |
| 126 | + set -x |
| 127 | + cd ${GITHUB_WORKSPACE} |
| 128 | + make -s check |
| 129 | + - name: Print log files |
| 130 | + if: ${{ always() }} |
| 131 | + run: | |
| 132 | + set -x |
| 133 | + cd ${GITHUB_WORKSPACE} |
| 134 | + cat test.sh.log |
| 135 | + cat utils/*.log |
| 136 | + - name: Test - make ptest |
| 137 | + if: ${{ success() }} |
| 138 | + run: | |
| 139 | + set -x |
| 140 | + cd ${GITHUB_WORKSPACE} |
| 141 | + make -s ptest |
| 142 | + - name: Print log files |
| 143 | + if: ${{ always() }} |
| 144 | + run: | |
| 145 | + set -x |
| 146 | + cd ${GITHUB_WORKSPACE} |
| 147 | + cat test.sh.log |
| 148 | + cat utils/*.log |
| 149 | + - name: make distclean |
| 150 | + if: ${{ always() }} |
| 151 | + run: | |
| 152 | + set -x |
| 153 | + cd ${GITHUB_WORKSPACE} |
| 154 | + make -s distclean |
| 155 | +
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