Merge branch 'main' into remove-links-rst

mattcieslak · web-flow · commit 8d15bf9d3662 · 2025-01-15T12:07:47.000-05:00
diff --git a/cubids/cli.py b/cubids/cli.py
@@ -74,7 +74,7 @@ def _parse_validate():
         default=None,
     )
     parser.add_argument(
-        "--ignore_nifti_headers",
+        "--ignore-nifti-headers",
         action="store_true",
         default=False,
         help="Disregard NIfTI header content during validation",
diff --git a/cubids/workflows.py b/cubids/workflows.py
@@ -231,7 +231,7 @@ def validate(
             linked_output_prefix_t,
         ]
         if ignore_nifti_headers:
-            cmd.append("--ignore_nifti_headers")
+            cmd.append("--ignore-nifti-headers")
 
     elif container_type == "singularity":
         cmd = [
@@ -250,7 +250,7 @@ def validate(
             linked_output_prefix_t,
         ]
         if ignore_nifti_headers:
-            cmd.append("--ignore_nifti_headers")
+            cmd.append("--ignore-nifti-headers")
 
         if sequential:
             cmd.append("--sequential")
diff --git a/docs/examples.rst b/docs/examples.rst
diff --git a/docs/index.rst b/docs/index.rst
@@ -13,7 +13,6 @@ Contents
    usage
    cli
    example
-   examples
    ../CONTRIBUTING
    ../AUTHORS
    ../HISTORY

Original file line number	Diff line number	Diff line change
`@@ -74,7 +74,7 @@ def _parse_validate():`
`74`	`74`	`default=None,`
`75`	`75`	`)`
`76`	`76`	`parser.add_argument(`
`77`		`- "--ignore_nifti_headers",`
	`77`	`+ "--ignore-nifti-headers",`
`78`	`78`	`action="store_true",`
`79`	`79`	`default=False,`
`80`	`80`	`help="Disregard NIfTI header content during validation",`