modified naming of shell script used in apply function, to be saved into BIDS dir, as expected

Author: gabridele

cubids/cubids.py

@@ -416,7 +416,7 @@ def apply_tsv_changes(self, summary_tsv, files_tsv, new_prefix, raise_on_error=T
 
         full_cmd = "\n".join(merge_commands + move_ops)
         if full_cmd:
-            renames = new_prefix + "_full_cmd.sh"
+            renames = str(Path(self.path) / (new_prefix + "_full_cmd.sh"))
 
             # write full_cmd to a .sh file
             with open(renames, "w") as fo: