Merge pull request #372 from gabridele/dash-syntaxCLI

Uniformize CLI named arguments to dash-only syntax

Author: gabridele

cubids/cli.py

@@ -74,7 +74,7 @@ def _parse_validate():
         default=None,
     )
     parser.add_argument(
-        "--ignore_nifti_headers",
+        "--ignore-nifti-headers",
         action="store_true",
         default=False,
         help="Disregard NIfTI header content during validation",

cubids/workflows.py

@@ -231,7 +231,7 @@ def validate(
             linked_output_prefix_t,
         ]
         if ignore_nifti_headers:
-            cmd.append("--ignore_nifti_headers")
+            cmd.append("--ignore-nifti-headers")
 
     elif container_type == "singularity":
         cmd = [
@@ -250,7 +250,7 @@ def validate(
             linked_output_prefix_t,
         ]
         if ignore_nifti_headers:
-            cmd.append("--ignore_nifti_headers")
+            cmd.append("--ignore-nifti-headers")
 
         if sequential:
             cmd.append("--sequential")